MGE detailed information
MGE type: Prophage MGE length: 38309 bp
Accession: NZ_CP085819 Location: 4011205..4049513 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain Blastoise Replicon: chromosome
Accession: NZ_CP085819 Location: 4011205..4049513 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain Blastoise Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJF65_RS19245 () | 4007478..4008119 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| LJF65_RS19250 () | 4008219..4009397 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| LJF65_RS19255 () | 4009528..4009818 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| LJF65_RS19260 () | 4009886..4010239 | + | 354 | WP_001042119.1 | protein YebF | - |
| LJF65_RS19265 () | 4010333..4010992 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| LJF65_RS19270 () | 4011205..4013256 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| LJF65_RS19275 () | 4013291..4013989 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| LJF65_RS19280 () | 4014013..4014669 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| LJF65_RS19285 () | 4014777..4015007 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| LJF65_RS19290 () | 4015145..4015519 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| LJF65_RS19295 () | 4015520..4016395 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| LJF65_RS19300 () | 4016412..4016765 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 4016865..4017010 | - | 146 | - | - | Antitoxin Detail |
| - | 4016905..4017008 | + | 104 | - | - | Toxin Detail |
| LJF65_RS19305 () | 4017139..4018062 | - | 924 | Protein_3756 | hypothetical protein ; Integrase | Integrase |
| LJF65_RS19310 () | 4018326..4018787 | - | 462 | Protein_3757 | DNA breaking-rejoining protein | - |
| LJF65_RS19315 () | 4018776..4018967 | + | 192 | Protein_3758 | glycoside hydrolase family 19 protein | - |
| LJF65_RS19320 () | 4019021..4019554 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| LJF65_RS19325 () | 4019811..4019978 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| LJF65_RS19330 () | 4020043..4020231 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| LJF65_RS19335 () | 4020286..4020546 | + | 261 | Protein_3762 | DUF1441 family protein | - |
| LJF65_RS19340 () | 4020761..4021105 | + | 345 | Protein_3763 | macro domain-containing protein | - |
| LJF65_RS19345 () | 4021115..4021585 | + | 471 | Protein_3764 | tail fiber assembly protein | - |
| LJF65_RS19350 () | 4021682..4021882 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| LJF65_RS19355 () | 4022272..4022452 | - | 181 | Protein_3766 | IS3 family transposase | - |
| LJF65_RS19360 () | 4022443..4022544 | + | 102 | Protein_3767 | arsenic transporter | - |
| LJF65_RS19365 () | 4023166..4023398 | + | 233 | Protein_3768 | helix-turn-helix domain-containing protein | - |
| LJF65_RS19370 () | 4023725..4024339 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| LJF65_RS19375 () | 4024349..4024507 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| LJF65_RS19380 () | 4024640..4025554 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| LJF65_RS19385 () | 4026858..4027280 | - | 423 | Protein_3772 | hypothetical protein ; Integrase | Integrase |
| LJF65_RS19390 () | 4027350..4028544 | + | 1195 | Protein_3773 | IS256 family transposase IS285 | Transposase |
| LJF65_RS19395 () | 4028690..4028830 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| LJF65_RS19400 () | 4028996..4029265 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| LJF65_RS19405 () | 4029635..4030054 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| LJF65_RS19410 () | 4030442..4030918 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| LJF65_RS19415 () | 4031248..4031643 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| LJF65_RS19420 () | 4032327..4033049 | + | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| LJF65_RS19425 () | 4033334..4033498 | + | 165 | WP_001134856.1 | membrane protein | - |
| LJF65_RS19430 () | 4033722..4034372 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| LJF65_RS19435 () | 4034391..4034582 | - | 192 | WP_000457836.1 | YebW family protein | - |
| LJF65_RS19440 () | 4034693..4034929 | - | 237 | WP_024131108.1 | YebV family protein | - |
| LJF65_RS19445 () | 4035047..4036486 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LJF65_RS19450 () | 4036564..4039197 | - | 2634 | WP_001535256.1 | hypothetical protein | VF |
| LJF65_RS19455 () | 4039166..4040449 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| LJF65_RS19460 () | 4040578..4041075 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| LJF65_RS19465 () | 4041173..4041859 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| LJF65_RS19470 () | 4041879..4043927 | + | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| LJF65_RS19475 () | 4044120..4045001 | + | 882 | WP_000984498.1 | protease HtpX | - |
| LJF65_RS19480 () | 4045049..4046422 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| LJF65_RS19485 () | 4046598..4047389 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| LJF65_RS19490 () | 4047601..4047840 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| LJF65_RS19495 () | 4047998..4048141 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| LJF65_RS19500 () | 4048212..4048499 | + | 288 | WP_001000660.1 | YebO family protein | - |
| LJF65_RS19505 () | 4049148..4049291 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| LJF65_RS19510 () | 4049304..4049513 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| LJF65_RS19515 () | 4049733..4051478 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| LJF65_RS19520 () | 4051544..4052353 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| LJF65_RS19525 () | 4052350..4052916 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| LJF65_RS19530 () | 4053326..4053784 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26047 | NC_016856 | 1954607..1985261 | 0.005 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0 |