MGE detailed information
MGE type: Prophage MGE length: 38318 bp
Accession: NZ_AP023288 Location: 2135223..2173540 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-3835 Replicon: chromosome
Accession: NZ_AP023288 Location: 2135223..2173540 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-3835 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5610_RS10470 () | 2131496..2132137 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| K5610_RS10475 () | 2132237..2133415 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| K5610_RS10480 () | 2133546..2133836 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| K5610_RS10485 () | 2133904..2134257 | + | 354 | WP_001042119.1 | protein YebF | - |
| K5610_RS10490 () | 2134351..2135010 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| K5610_RS10495 () | 2135223..2137274 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| K5610_RS10500 () | 2137309..2138007 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| K5610_RS10505 () | 2138031..2138687 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| K5610_RS10510 () | 2138795..2139025 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| K5610_RS10515 () | 2139163..2139537 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| K5610_RS10520 () | 2139538..2140413 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| K5610_RS10525 () | 2140430..2140783 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2140883..2141028 | - | 146 | - | - | Antitoxin Detail |
| - | 2140923..2141026 | + | 104 | - | - | Toxin Detail |
| K5610_RS10530 () | 2141157..2142080 | - | 924 | Protein_2071 | hypothetical protein ; Integrase | Integrase |
| K5610_RS24565 () | 2142344..2142805 | - | 462 | Protein_2072 | DNA breaking-rejoining protein | - |
| K5610_RS10540 () | 2142794..2142985 | + | 192 | Protein_2073 | glycoside hydrolase family 19 protein | - |
| K5610_RS10545 () | 2143039..2143572 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| K5610_RS10550 () | 2143829..2143996 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| K5610_RS10555 () | 2144061..2144249 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| K5610_RS10560 () | 2144304..2144564 | + | 261 | Protein_2077 | DUF1441 family protein | - |
| K5610_RS10565 () | 2144779..2145123 | + | 345 | Protein_2078 | macro domain-containing protein | - |
| K5610_RS10570 () | 2145133..2145603 | + | 471 | Protein_2079 | tail fiber assembly protein | - |
| K5610_RS10575 () | 2145700..2145900 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| K5610_RS24570 () | 2146290..2146470 | - | 181 | Protein_2081 | IS3 family transposase | - |
| K5610_RS10580 () | 2146461..2146562 | + | 102 | Protein_2082 | arsenic transporter | - |
| K5610_RS24575 () | 2147184..2147416 | + | 233 | Protein_2083 | helix-turn-helix domain-containing protein | - |
| K5610_RS10595 () | 2147743..2148357 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| K5610_RS10600 () | 2148367..2148525 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| K5610_RS10605 () | 2148658..2149572 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| K5610_RS10610 () | 2150885..2151307 | - | 423 | Protein_2087 | hypothetical protein ; Integrase | Integrase |
| K5610_RS10615 () | 2151377..2152571 | + | 1195 | Protein_2088 | IS256 family transposase IS285 | Transposase |
| K5610_RS10620 () | 2152717..2152857 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| K5610_RS10625 () | 2153023..2153292 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| K5610_RS10630 () | 2153662..2154081 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| K5610_RS10635 () | 2154469..2154945 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| K5610_RS10640 () | 2155275..2155670 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| K5610_RS10645 () | 2156353..2157075 | + | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| K5610_RS10650 () | 2157360..2157524 | + | 165 | WP_001134856.1 | membrane protein | - |
| K5610_RS10655 () | 2157748..2158398 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| K5610_RS10660 () | 2158417..2158608 | - | 192 | WP_000457836.1 | YebW family protein | - |
| K5610_RS10665 () | 2158719..2158955 | - | 237 | WP_024131108.1 | YebV family protein | - |
| K5610_RS10670 () | 2159073..2160512 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| K5610_RS10675 () | 2160590..2163223 | - | 2634 | WP_001535256.1 | hypothetical protein | VF |
| K5610_RS10680 () | 2163192..2164475 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| K5610_RS10685 () | 2164604..2165101 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| K5610_RS10690 () | 2165199..2165885 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| K5610_RS10695 () | 2165905..2167953 | + | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| K5610_RS10700 () | 2168147..2169028 | + | 882 | WP_000984498.1 | protease HtpX | - |
| K5610_RS10705 () | 2169076..2170449 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| K5610_RS10710 () | 2170625..2171416 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| K5610_RS10715 () | 2171628..2171867 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| K5610_RS10720 () | 2172025..2172168 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| K5610_RS10725 () | 2172239..2172526 | + | 288 | WP_001000660.1 | YebO family protein | - |
| K5610_RS10730 () | 2173175..2173318 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| K5610_RS10735 () | 2173331..2173540 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| K5610_RS10740 () | 2173760..2175505 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| K5610_RS10745 () | 2175571..2176380 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| K5610_RS10750 () | 2176377..2176943 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| K5610_RS10755 () | 2177353..2177811 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26047 | NC_016856 | 1954607..1985261 | 0.005 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0 |