MGE detailed information
MGE type: Prophage MGE length: 38310 bp
Accession: NZ_CP121262 Location: 2067806..2106115 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain 013 Replicon: chromosome
Accession: NZ_CP121262 Location: 2067806..2106115 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain 013 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P8621_RS10060 () | 2064079..2064720 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| P8621_RS10065 () | 2064820..2065998 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| P8621_RS10070 () | 2066129..2066419 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| P8621_RS10075 () | 2066487..2066840 | + | 354 | WP_001042119.1 | protein YebF | - |
| P8621_RS10080 () | 2066934..2067593 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| P8621_RS10085 () | 2067806..2069857 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| P8621_RS10090 () | 2069892..2070590 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| P8621_RS10095 () | 2070614..2071270 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| P8621_RS10100 () | 2071378..2071608 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| P8621_RS10105 () | 2071746..2072120 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| P8621_RS10110 () | 2072121..2072996 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| P8621_RS10115 () | 2073013..2073366 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2073466..2073611 | - | 146 | - | - | Antitoxin Detail |
| - | 2073506..2073609 | + | 104 | - | - | Toxin Detail |
| P8621_RS10120 () | 2073740..2074663 | - | 924 | Protein_1976 | hypothetical protein ; Integrase | Integrase |
| P8621_RS10125 () | 2074927..2075388 | - | 462 | Protein_1977 | DNA breaking-rejoining protein | - |
| P8621_RS10130 () | 2075377..2075568 | + | 192 | Protein_1978 | glycoside hydrolase family 19 protein | - |
| P8621_RS10135 () | 2075622..2076155 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| P8621_RS10140 () | 2076412..2076579 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| P8621_RS10145 () | 2076644..2076832 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| P8621_RS10150 () | 2076887..2077147 | + | 261 | Protein_1982 | DUF1441 family protein | - |
| P8621_RS10155 () | 2077362..2077706 | + | 345 | Protein_1983 | macro domain-containing protein | - |
| P8621_RS10160 () | 2077716..2078186 | + | 471 | Protein_1984 | tail fiber assembly protein | - |
| P8621_RS10165 () | 2078283..2078483 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| P8621_RS10170 () | 2078873..2079053 | - | 181 | Protein_1986 | IS3 family transposase | - |
| P8621_RS10175 () | 2079053..2079178 | + | 126 | WP_000457876.1 | hypothetical protein | - |
| P8621_RS10180 () | 2079692..2079838 | - | 147 | WP_001520350.1 | hypothetical protein | - |
| P8621_RS10185 () | 2079832..2079999 | + | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| P8621_RS10190 () | 2080326..2080940 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| P8621_RS10195 () | 2080950..2081108 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| P8621_RS10200 () | 2081241..2082155 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| P8621_RS10205 () | 2083459..2083881 | - | 423 | Protein_1993 | hypothetical protein ; Integrase | Integrase |
| P8621_RS10210 () | 2083951..2085145 | + | 1195 | Protein_1994 | IS256 family transposase IS285 | Transposase |
| P8621_RS10215 () | 2085291..2085431 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| P8621_RS10220 () | 2085597..2085866 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| P8621_RS10225 () | 2086236..2086655 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| P8621_RS10230 () | 2087043..2087519 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| P8621_RS10235 () | 2087849..2088244 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| P8621_RS10240 () | 2088928..2089650 | + | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| P8621_RS10245 () | 2089935..2090099 | + | 165 | WP_001134856.1 | membrane protein | - |
| P8621_RS10250 () | 2090323..2090973 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| P8621_RS10255 () | 2090992..2091183 | - | 192 | WP_000457836.1 | YebW family protein | - |
| P8621_RS10260 () | 2091294..2091530 | - | 237 | WP_024131108.1 | YebV family protein | - |
| P8621_RS10265 () | 2091648..2093087 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| P8621_RS10270 () | 2093165..2095798 | - | 2634 | WP_001535256.1 | Intermembrane transport protein YebT | VF |
| P8621_RS10275 () | 2095767..2097050 | - | 1284 | WP_080247963.1 | membrane integrity lipid transport subunit YebS | - |
| P8621_RS10280 () | 2097179..2097676 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| P8621_RS10285 () | 2097774..2098460 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| P8621_RS10290 () | 2098480..2100528 | + | 2049 | WP_080247962.1 | carboxy terminal-processing peptidase | - |
| P8621_RS10295 () | 2100722..2101603 | + | 882 | WP_000984498.1 | protease HtpX | - |
| P8621_RS10300 () | 2101651..2103024 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| P8621_RS10305 () | 2103200..2103991 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| P8621_RS10310 () | 2104203..2104442 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| P8621_RS10315 () | 2104600..2104743 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| P8621_RS10320 () | 2104814..2105101 | + | 288 | WP_001000660.1 | YebO family protein | - |
| P8621_RS10325 () | 2105750..2105893 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| P8621_RS10330 () | 2105906..2106115 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| P8621_RS10335 () | 2106335..2108080 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| P8621_RS10340 () | 2108146..2108955 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| P8621_RS10345 () | 2108952..2109518 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| P8621_RS10350 () | 2109928..2110386 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26047 | NC_016856 | 1954607..1985261 | 0.005 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0 |