Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2087150..2087295 Replicon chromosome
Accession NZ_AP023299
Organism Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4334

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2087190..2087293 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2087150..2087295 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
K5616_RS10155 2083576..2084274 - 699 WP_000944282.1 exodeoxyribonuclease X -
K5616_RS10160 2084298..2084954 - 657 WP_000100258.1 carbon-nitrogen hydrolase family protein -
K5616_RS10165 2085062..2085292 - 231 WP_000856224.1 DNA polymerase III subunit theta -
K5616_RS10170 2085430..2085804 + 375 WP_000168393.1 CopC domain-containing protein YobA -
K5616_RS10175 2085805..2086680 + 876 WP_000979702.1 copper homeostasis membrane protein CopD -
K5616_RS10180 2086697..2087050 + 354 WP_000722368.1 YebY family protein -
- 2087150..2087295 - 146 - - Antitoxin
- 2087190..2087293 + 104 - - Toxin
K5616_RS10185 2087424..2088347 - 924 Protein_2000 tyrosine-type recombinase/integrase -
K5616_RS23960 2088611..2089072 - 462 Protein_2001 DNA breaking-rejoining protein -
K5616_RS10195 2089061..2089252 + 192 Protein_2002 glycoside hydrolase family 19 protein -
K5616_RS10200 2089306..2089839 + 534 WP_001050882.1 DUF2514 domain-containing protein -
K5616_RS10205 2090096..2090263 - 168 WP_000789530.1 lytic enzyme -
K5616_RS10210 2090328..2090516 - 189 WP_001521334.1 hypothetical protein -
K5616_RS10215 2090571..2090831 + 261 Protein_2006 DUF1441 family protein -
K5616_RS10220 2091046..2091390 + 345 Protein_2007 macro domain-containing protein -
K5616_RS10225 2091400..2091870 + 471 Protein_2008 tail fiber assembly protein -
K5616_RS10230 2091967..2092167 - 201 WP_010989029.1 PagK family vesicle-borne virulence factor -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Prophage - sopE2 2080618..2104665 24047


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T37320 NZ_AP023299:2087190-2087293 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 146 bp

>AT37320 NZ_AP023299:c2087295-2087150 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References