MGE detailed information
MGE type: Prophage MGE length: 38310 bp
Accession: NZ_CP117244 Location: 2073445..2111754 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 14028 Replicon: chromosome
Accession: NZ_CP117244 Location: 2073445..2111754 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 14028 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ30_RS10050 () | 2069718..2070359 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| PQQ30_RS10055 () | 2070459..2071637 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PQQ30_RS10060 () | 2071768..2072058 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| PQQ30_RS10065 () | 2072126..2072479 | + | 354 | WP_001042119.1 | protein YebF | - |
| PQQ30_RS10070 () | 2072573..2073232 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| PQQ30_RS10075 () | 2073445..2075496 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| PQQ30_RS10080 () | 2075531..2076229 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| PQQ30_RS10085 () | 2076253..2076909 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| PQQ30_RS10090 () | 2077017..2077247 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PQQ30_RS10095 () | 2077385..2077759 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| PQQ30_RS10100 () | 2077760..2078635 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| PQQ30_RS10105 () | 2078652..2079005 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2079105..2079250 | - | 146 | - | - | Antitoxin Detail |
| - | 2079145..2079248 | + | 104 | - | - | Toxin Detail |
| PQQ30_RS10110 () | 2079379..2080302 | - | 924 | Protein_1976 | hypothetical protein ; Integrase | Integrase |
| PQQ30_RS10115 () | 2080566..2081027 | - | 462 | Protein_1977 | DNA breaking-rejoining protein | - |
| PQQ30_RS10120 () | 2081016..2081207 | + | 192 | Protein_1978 | glycoside hydrolase family 19 protein | - |
| PQQ30_RS10125 () | 2081261..2081794 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| PQQ30_RS10130 () | 2082051..2082218 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| PQQ30_RS10135 () | 2082283..2082471 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| PQQ30_RS10140 () | 2082526..2082786 | + | 261 | Protein_1982 | DUF1441 family protein | - |
| PQQ30_RS10145 () | 2083001..2083345 | + | 345 | Protein_1983 | macro domain-containing protein | - |
| PQQ30_RS10150 () | 2083355..2083825 | + | 471 | Protein_1984 | tail fiber assembly protein | - |
| PQQ30_RS10155 () | 2083922..2084122 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| PQQ30_RS10160 () | 2084512..2084692 | - | 181 | Protein_1986 | IS3 family transposase | - |
| PQQ30_RS10165 () | 2084692..2084817 | + | 126 | WP_000457876.1 | hypothetical protein | - |
| PQQ30_RS10170 () | 2085331..2085477 | - | 147 | WP_001520350.1 | hypothetical protein | - |
| PQQ30_RS10175 () | 2085471..2085638 | + | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| PQQ30_RS10180 () | 2085965..2086579 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| PQQ30_RS10185 () | 2086589..2086747 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| PQQ30_RS10190 () | 2086880..2087794 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| PQQ30_RS10195 () | 2089098..2089520 | - | 423 | Protein_1993 | hypothetical protein ; Integrase | Integrase |
| PQQ30_RS10200 () | 2089590..2090784 | + | 1195 | Protein_1994 | IS256 family transposase IS285 | Transposase |
| PQQ30_RS10205 () | 2090930..2091070 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| PQQ30_RS10210 () | 2091236..2091505 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| PQQ30_RS10215 () | 2091875..2092294 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| PQQ30_RS10220 () | 2092682..2093158 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| PQQ30_RS10225 () | 2093488..2093883 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| PQQ30_RS10230 () | 2094567..2095289 | + | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| PQQ30_RS10235 () | 2095574..2095738 | + | 165 | WP_001134856.1 | membrane protein | - |
| PQQ30_RS10240 () | 2095962..2096612 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| PQQ30_RS10245 () | 2096631..2096822 | - | 192 | WP_000457836.1 | YebW family protein | - |
| PQQ30_RS10250 () | 2096933..2097169 | - | 237 | WP_024131108.1 | YebV family protein | - |
| PQQ30_RS10255 () | 2097287..2098726 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PQQ30_RS10260 () | 2098804..2101437 | - | 2634 | WP_001535256.1 | Intermembrane transport protein YebT | VF |
| PQQ30_RS10265 () | 2101406..2102689 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| PQQ30_RS10270 () | 2102818..2103315 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| PQQ30_RS10275 () | 2103413..2104099 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| PQQ30_RS10280 () | 2104119..2106167 | + | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| PQQ30_RS10285 () | 2106361..2107242 | + | 882 | WP_000984498.1 | protease HtpX | - |
| PQQ30_RS10290 () | 2107290..2108663 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| PQQ30_RS10295 () | 2108839..2109630 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| PQQ30_RS10300 () | 2109842..2110081 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| PQQ30_RS10305 () | 2110239..2110382 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| PQQ30_RS10310 () | 2110453..2110740 | + | 288 | WP_001000660.1 | YebO family protein | - |
| PQQ30_RS10315 () | 2111389..2111532 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| PQQ30_RS10320 () | 2111545..2111754 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| PQQ30_RS10325 () | 2111974..2113719 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| PQQ30_RS10330 () | 2113785..2114594 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| PQQ30_RS10335 () | 2114591..2115157 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| PQQ30_RS10340 () | 2115567..2116025 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26047 | NC_016856 | 1954607..1985261 | 0.005 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0 |