MGE detailed information
MGE type: Prophage MGE length: 38318 bp
Accession: NZ_CP085987 Location: 416871..455188 Organism: Salmonella enterica strain SZL 38 Replicon: chromosome
Accession: NZ_CP085987 Location: 416871..455188 Organism: Salmonella enterica strain SZL 38 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LKX03_RS02615 () | 413144..413785 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| LKX03_RS02620 () | 413885..415063 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| LKX03_RS02625 () | 415194..415484 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| LKX03_RS02630 () | 415552..415905 | + | 354 | WP_001042119.1 | protein YebF | - |
| LKX03_RS02635 () | 415999..416658 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| LKX03_RS02640 () | 416871..418922 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| LKX03_RS02645 () | 418957..419655 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| LKX03_RS02650 () | 419679..420335 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| LKX03_RS02655 () | 420443..420673 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| LKX03_RS02660 () | 420811..421185 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| LKX03_RS02665 () | 421186..422061 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| LKX03_RS02670 () | 422078..422431 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 422531..422676 | - | 146 | - | - | Antitoxin Detail |
| - | 422571..422674 | + | 104 | - | - | Toxin Detail |
| LKX03_RS02675 () | 422805..423728 | - | 924 | Protein_443 | Nitrite reductase (NADH) small subunit ; Integrase | Integrase |
| LKX03_RS02680 () | 423992..424453 | - | 462 | Protein_444 | DNA breaking-rejoining protein | - |
| LKX03_RS02685 () | 424442..424633 | + | 192 | Protein_445 | glycoside hydrolase family 19 protein | - |
| LKX03_RS02690 () | 424687..425220 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| LKX03_RS02695 () | 425477..425644 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| LKX03_RS02700 () | 425709..425897 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| LKX03_RS02705 () | 425952..426212 | + | 261 | Protein_449 | DUF1441 family protein | - |
| LKX03_RS02710 () | 426427..426771 | + | 345 | Protein_450 | macro domain-containing protein | - |
| LKX03_RS02715 () | 426781..427251 | + | 471 | Protein_451 | tail fiber assembly protein | - |
| LKX03_RS02720 () | 427348..427548 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| LKX03_RS02725 () | 427938..428118 | - | 181 | Protein_453 | IS3 family transposase | - |
| LKX03_RS02730 () | 428109..428210 | + | 102 | Protein_454 | arsenic transporter | - |
| LKX03_RS02735 () | 428832..429064 | + | 233 | Protein_455 | helix-turn-helix domain-containing protein | - |
| LKX03_RS02740 () | 429391..430005 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| LKX03_RS02745 () | 430015..430173 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| LKX03_RS02750 () | 430306..431220 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| LKX03_RS02755 () | 432533..432955 | - | 423 | Protein_459 | hypothetical protein ; Integrase | Integrase |
| LKX03_RS02760 () | 433025..434219 | + | 1195 | Protein_460 | IS256 family transposase IS285 | Transposase |
| LKX03_RS02765 () | 434365..434505 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| LKX03_RS02770 () | 434671..434940 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| LKX03_RS02775 () | 435310..435729 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| LKX03_RS02780 () | 436117..436593 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| LKX03_RS02785 () | 436923..437318 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| LKX03_RS02790 () | 438001..438723 | + | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| LKX03_RS02795 () | 439008..439172 | + | 165 | WP_001134856.1 | membrane protein | - |
| LKX03_RS02800 () | 439396..440046 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| LKX03_RS02805 () | 440065..440256 | - | 192 | WP_000457836.1 | YebW family protein | - |
| LKX03_RS02810 () | 440367..440603 | - | 237 | WP_024131108.1 | YebV family protein | - |
| LKX03_RS02815 () | 440721..442160 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LKX03_RS02820 () | 442238..444871 | - | 2634 | WP_001535256.1 | hypothetical protein | VF |
| LKX03_RS02825 () | 444840..446123 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| LKX03_RS02830 () | 446252..446749 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| LKX03_RS02835 () | 446847..447533 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| LKX03_RS02840 () | 447553..449601 | + | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| LKX03_RS02845 () | 449795..450676 | + | 882 | WP_000984498.1 | protease HtpX | - |
| LKX03_RS02850 () | 450724..452097 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| LKX03_RS02855 () | 452273..453064 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| LKX03_RS02860 () | 453276..453515 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| LKX03_RS02865 () | 453673..453816 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| LKX03_RS02870 () | 453887..454174 | + | 288 | WP_001000660.1 | YebO family protein | - |
| LKX03_RS02875 () | 454823..454966 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| LKX03_RS02880 () | 454979..455188 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| LKX03_RS02885 () | 455408..457153 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| LKX03_RS02890 () | 457219..458028 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| LKX03_RS02895 () | 458025..458591 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| LKX03_RS02900 () | 459001..459459 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26047 | NC_016856 | 1954607..1985261 | 0.005 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0 |