MGE detailed information
MGE type: Prophage MGE length: 25384 bp
Accession: NZ_CP117398 Location: 2128394..2153777 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain RM015 Replicon: chromosome
Accession: NZ_CP117398 Location: 2128394..2153777 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain RM015 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ09_RS10405 () | 2124667..2125308 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| PQQ09_RS10410 () | 2125408..2126586 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PQQ09_RS10415 () | 2126717..2127007 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| PQQ09_RS10420 () | 2127075..2127428 | + | 354 | WP_001042119.1 | protein YebF | - |
| PQQ09_RS10425 () | 2127522..2128181 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| PQQ09_RS10430 () | 2128394..2130445 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| PQQ09_RS10435 () | 2130480..2131178 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| PQQ09_RS10440 () | 2131202..2131858 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| PQQ09_RS10445 () | 2131966..2132196 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PQQ09_RS10450 () | 2132334..2132708 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| PQQ09_RS10455 () | 2132709..2133584 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| PQQ09_RS10460 () | 2133601..2133954 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2134054..2134199 | - | 146 | - | - | Antitoxin Detail |
| - | 2134094..2134197 | + | 104 | - | - | Toxin Detail |
| PQQ09_RS10465 () | 2134328..2135251 | - | 924 | Protein_2047 | hypothetical protein ; Integrase | Integrase |
| PQQ09_RS10470 () | 2135515..2135976 | - | 462 | Protein_2048 | DNA breaking-rejoining protein | - |
| PQQ09_RS10475 () | 2135965..2136156 | + | 192 | Protein_2049 | glycoside hydrolase family 19 protein | - |
| PQQ09_RS10480 () | 2136210..2136743 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| PQQ09_RS10485 () | 2137000..2137167 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| PQQ09_RS10490 () | 2137232..2137420 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| PQQ09_RS10495 () | 2137475..2137735 | + | 261 | Protein_2053 | DUF1441 family protein | - |
| PQQ09_RS10500 () | 2137950..2138294 | + | 345 | Protein_2054 | macro domain-containing protein | - |
| PQQ09_RS10505 () | 2138304..2138774 | + | 471 | Protein_2055 | tail fiber assembly protein | - |
| PQQ09_RS10510 () | 2138871..2139071 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| PQQ09_RS10515 () | 2139461..2139641 | - | 181 | Protein_2057 | IS3 family transposase | - |
| PQQ09_RS10520 () | 2139641..2139766 | + | 126 | WP_000457876.1 | hypothetical protein | - |
| PQQ09_RS10525 () | 2140420..2140587 | + | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| PQQ09_RS10530 () | 2140914..2141528 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| PQQ09_RS10535 () | 2141538..2141696 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| PQQ09_RS10540 () | 2141829..2142743 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| PQQ09_RS10545 () | 2144047..2144469 | - | 423 | Protein_2063 | hypothetical protein ; Integrase | Integrase |
| PQQ09_RS10550 () | 2144539..2145733 | + | 1195 | Protein_2064 | IS256 family transposase IS285 | Transposase |
| PQQ09_RS10555 () | 2145879..2146019 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| PQQ09_RS10560 () | 2146185..2146454 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| PQQ09_RS10565 () | 2146824..2147243 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| PQQ09_RS10570 () | 2147631..2148107 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| PQQ09_RS10575 () | 2148437..2148832 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| PQQ09_RS10580 () | 2149516..2150238 | + | 723 | WP_000182072.1 | hypothetical protein | VF |
| PQQ09_RS10585 () | 2150523..2150687 | + | 165 | WP_001134856.1 | membrane protein | - |
| PQQ09_RS10590 () | 2150911..2151561 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| PQQ09_RS10595 () | 2151580..2151771 | - | 192 | WP_000457836.1 | YebW family protein | - |
| PQQ09_RS10600 () | 2151882..2152118 | - | 237 | WP_024131108.1 | YebV family protein | - |
| PQQ09_RS10605 () | 2152236..2153675 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PQQ09_RS10610 () | 2153753..2156386 | - | 2634 | WP_001535256.1 | PqiB family protein | - |
| PQQ09_RS10615 () | 2156355..2157638 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| PQQ09_RS10620 () | 2157767..2158264 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26047 | NC_016856 | 1954607..1985261 | 0.005 |