MGE detailed information
MGE type: Prophage MGE length: 28001 bp
Accession: NZ_AP023291 Location: 2108556..2136556 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain L-4126 Replicon: chromosome
Accession: NZ_AP023291 Location: 2108556..2136556 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain L-4126 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5613_RS10225 () | 2104829..2105470 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| K5613_RS10230 () | 2105570..2106748 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| K5613_RS10235 () | 2106879..2107169 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| K5613_RS10240 () | 2107237..2107590 | + | 354 | WP_001042119.1 | protein YebF | - |
| K5613_RS10245 () | 2107684..2108343 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| K5613_RS10250 () | 2108556..2110607 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| K5613_RS10255 () | 2110642..2111340 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| K5613_RS10260 () | 2111364..2112020 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| K5613_RS10265 () | 2112128..2112358 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| K5613_RS10270 () | 2112496..2112870 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| K5613_RS10275 () | 2112871..2113746 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| K5613_RS10280 () | 2113763..2114116 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2114216..2114361 | - | 146 | - | - | Antitoxin Detail |
| - | 2114256..2114359 | + | 104 | - | - | Toxin Detail |
| K5613_RS10285 () | 2114490..2115413 | - | 924 | Protein_2022 | hypothetical protein ; Integrase | Integrase |
| K5613_RS24300 () | 2115677..2116138 | - | 462 | Protein_2023 | DNA breaking-rejoining protein | - |
| K5613_RS10295 () | 2116127..2116318 | + | 192 | Protein_2024 | glycoside hydrolase family 19 protein | - |
| K5613_RS10300 () | 2116372..2116905 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| K5613_RS10305 () | 2117162..2117329 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| K5613_RS10310 () | 2117394..2117582 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| K5613_RS10315 () | 2117637..2117897 | + | 261 | Protein_2028 | DUF1441 family protein | - |
| K5613_RS10320 () | 2118112..2118456 | + | 345 | Protein_2029 | macro domain-containing protein | - |
| K5613_RS10325 () | 2118466..2118936 | + | 471 | Protein_2030 | tail fiber assembly protein | - |
| K5613_RS10330 () | 2119033..2119233 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| K5613_RS24305 () | 2119623..2119803 | - | 181 | Protein_2032 | IS3 family transposase | - |
| K5613_RS10335 () | 2119794..2119895 | + | 102 | Protein_2033 | arsenic transporter | - |
| K5613_RS24310 () | 2120517..2120749 | + | 233 | Protein_2034 | helix-turn-helix domain-containing protein | - |
| K5613_RS10350 () | 2121076..2121690 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| K5613_RS10355 () | 2121700..2121858 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| K5613_RS10360 () | 2121991..2122905 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| K5613_RS10365 () | 2124218..2124640 | - | 423 | Protein_2038 | hypothetical protein ; Integrase | Integrase |
| K5613_RS10370 () | 2124710..2125904 | + | 1195 | Protein_2039 | IS256 family transposase IS285 | Transposase |
| K5613_RS10375 () | 2126050..2126190 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| K5613_RS10380 () | 2126356..2126625 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| K5613_RS10385 () | 2126995..2127414 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| K5613_RS10390 () | 2127802..2128278 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| K5613_RS10395 () | 2128608..2129003 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| K5613_RS10400 () | 2129686..2130408 | + | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| K5613_RS10405 () | 2130693..2130857 | + | 165 | WP_001134856.1 | membrane protein | - |
| K5613_RS10410 () | 2131081..2131731 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| K5613_RS10415 () | 2131750..2131941 | - | 192 | WP_000457836.1 | YebW family protein | - |
| K5613_RS10420 () | 2132052..2132288 | - | 237 | WP_024131108.1 | YebV family protein | - |
| K5613_RS10425 () | 2132406..2133845 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| K5613_RS10430 () | 2133923..2136556 | - | 2634 | WP_001535256.1 | hypothetical protein | VF |
| K5613_RS10435 () | 2136525..2137808 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| K5613_RS10440 () | 2137937..2138434 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| K5613_RS10445 () | 2138532..2139218 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| K5613_RS10450 () | 2139238..2141286 | + | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0.008 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26047 | NC_016856 | 1954607..1985261 | 0.003 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0.008 |