MGE detailed information
MGE type: Prophage MGE length: 39987 bp
Accession: NZ_CP068696 Location: 2576270..2616256 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain NCCP16345 Replicon: chromosome
Accession: NZ_CP068696 Location: 2576270..2616256 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain NCCP16345 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JKV46_RS12665 () | 2572371..2574182 | + | 1812 | WP_001069113.1 | phosphogluconate dehydratase | - |
| JKV46_RS12670 () | 2574220..2574861 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| JKV46_RS12675 () | 2574961..2576139 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| JKV46_RS12680 () | 2576270..2576560 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| JKV46_RS12685 () | 2576628..2576981 | + | 354 | WP_001042119.1 | protein YebF | - |
| JKV46_RS12690 () | 2577075..2577734 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| JKV46_RS12695 () | 2577947..2579998 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| JKV46_RS12700 () | 2580033..2580731 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| JKV46_RS12705 () | 2580755..2581411 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| JKV46_RS12710 () | 2581519..2581749 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| JKV46_RS12715 () | 2581887..2582261 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| JKV46_RS12720 () | 2582262..2583137 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| JKV46_RS12725 () | 2583154..2583507 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2583607..2583752 | - | 146 | - | - | Antitoxin Detail |
| - | 2583647..2583750 | + | 104 | - | - | Toxin Detail |
| JKV46_RS12730 () | 2583881..2584804 | - | 924 | Protein_2477 | hypothetical protein ; Integrase | Integrase |
| JKV46_RS12735 () | 2585068..2585529 | - | 462 | Protein_2478 | DNA breaking-rejoining protein | - |
| JKV46_RS12740 () | 2585518..2585709 | + | 192 | Protein_2479 | glycoside hydrolase family 19 protein | - |
| JKV46_RS12745 () | 2585763..2586296 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| JKV46_RS12750 () | 2586553..2586720 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| JKV46_RS12755 () | 2586785..2586973 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| JKV46_RS12760 () | 2587028..2587288 | + | 261 | Protein_2483 | DUF1441 family protein | - |
| JKV46_RS12765 () | 2587503..2587847 | + | 345 | Protein_2484 | macro domain-containing protein | - |
| JKV46_RS12770 () | 2587857..2588327 | + | 471 | Protein_2485 | tail fiber assembly protein | - |
| JKV46_RS12775 () | 2588424..2588624 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| JKV46_RS12780 () | 2589014..2589194 | - | 181 | Protein_2487 | IS3 family transposase | - |
| JKV46_RS12785 () | 2589194..2589319 | + | 126 | WP_000457876.1 | hypothetical protein | - |
| JKV46_RS24570 () | 2589833..2589979 | - | 147 | WP_001520350.1 | hypothetical protein | - |
| JKV46_RS12790 () | 2589973..2590140 | + | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| JKV46_RS12795 () | 2590467..2591081 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| JKV46_RS12800 () | 2591091..2591249 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| JKV46_RS12805 () | 2591382..2592296 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| JKV46_RS12810 () | 2593600..2594022 | - | 423 | Protein_2494 | hypothetical protein ; Integrase | Integrase |
| JKV46_RS12815 () | 2594092..2595286 | + | 1195 | Protein_2495 | IS256 family transposase IS285 | Transposase |
| JKV46_RS12820 () | 2595432..2595572 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| JKV46_RS12825 () | 2595738..2596007 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| JKV46_RS12830 () | 2596377..2596796 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| JKV46_RS12835 () | 2597184..2597660 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| JKV46_RS12840 () | 2597990..2598385 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| JKV46_RS12845 () | 2599069..2599791 | + | 723 | WP_000182072.1 | hypothetical protein | VF |
| JKV46_RS12850 () | 2600076..2600240 | + | 165 | WP_001134856.1 | membrane protein | - |
| JKV46_RS12855 () | 2600464..2601114 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| JKV46_RS12860 () | 2601133..2601324 | - | 192 | WP_000457836.1 | YebW family protein | - |
| JKV46_RS12865 () | 2601435..2601671 | - | 237 | WP_024131108.1 | YebV family protein | - |
| JKV46_RS12870 () | 2601789..2603228 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JKV46_RS12875 () | 2603306..2605939 | - | 2634 | WP_001535256.1 | hypothetical protein | VF |
| JKV46_RS12880 () | 2605908..2607191 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| JKV46_RS12885 () | 2607320..2607817 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| JKV46_RS12890 () | 2607915..2608601 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| JKV46_RS12895 () | 2608621..2610669 | + | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| JKV46_RS12900 () | 2610863..2611744 | + | 882 | WP_000984498.1 | protease HtpX | - |
| JKV46_RS12905 () | 2611792..2613165 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| JKV46_RS12910 () | 2613341..2614132 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| JKV46_RS12915 () | 2614344..2614583 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| JKV46_RS12920 () | 2614741..2614884 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| JKV46_RS12925 () | 2614955..2615242 | + | 288 | WP_001000660.1 | YebO family protein | - |
| JKV46_RS12930 () | 2615891..2616034 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| JKV46_RS12935 () | 2616047..2616256 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| JKV46_RS12940 () | 2616476..2618221 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| JKV46_RS12945 () | 2618287..2619096 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| JKV46_RS12950 () | 2619093..2619659 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| JKV46_RS12955 () | 2620069..2620527 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0.001 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26047 | NC_016856 | 1954607..1985261 | 0.007 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0.001 |