MGE detailed information
MGE type: Prophage MGE length: 38318 bp
Accession: NZ_CP090545 Location: 2183982..2222299 Organism: Salmonella enterica strain 2017028-SE Replicon: chromosome
Accession: NZ_CP090545 Location: 2183982..2222299 Organism: Salmonella enterica strain 2017028-SE Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L0F57_RS10725 () | 2180255..2180896 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| L0F57_RS10730 () | 2180996..2182174 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| L0F57_RS10735 () | 2182305..2182595 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| L0F57_RS10740 () | 2182663..2183016 | + | 354 | WP_001042119.1 | protein YebF | - |
| L0F57_RS10745 () | 2183110..2183769 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| L0F57_RS10750 () | 2183982..2186033 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| L0F57_RS10755 () | 2186068..2186766 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| L0F57_RS10760 () | 2186790..2187446 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| L0F57_RS10765 () | 2187554..2187784 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| L0F57_RS10770 () | 2187922..2188296 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| L0F57_RS10775 () | 2188297..2189172 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| L0F57_RS10780 () | 2189189..2189542 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2189642..2189787 | - | 146 | - | - | Antitoxin Detail |
| - | 2189682..2189785 | + | 104 | - | - | Toxin Detail |
| L0F57_RS10785 () | 2189916..2190839 | - | 924 | Protein_2114 | hypothetical protein ; Integrase | Integrase |
| L0F57_RS10790 () | 2191103..2191564 | - | 462 | Protein_2115 | DNA breaking-rejoining protein | - |
| L0F57_RS10795 () | 2191553..2191744 | + | 192 | Protein_2116 | glycoside hydrolase family 19 protein | - |
| L0F57_RS10800 () | 2191798..2192331 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| L0F57_RS10805 () | 2192588..2192755 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| L0F57_RS10810 () | 2192820..2193008 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| L0F57_RS10815 () | 2193063..2193323 | + | 261 | Protein_2120 | DUF1441 family protein | - |
| L0F57_RS10820 () | 2193538..2193882 | + | 345 | Protein_2121 | macro domain-containing protein | - |
| L0F57_RS10825 () | 2193892..2194362 | + | 471 | Protein_2122 | tail fiber assembly protein | - |
| L0F57_RS10830 () | 2194459..2194659 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| L0F57_RS10835 () | 2195049..2195229 | - | 181 | Protein_2124 | IS3 family transposase | - |
| L0F57_RS10840 () | 2195229..2195354 | + | 126 | WP_000457876.1 | hypothetical protein | - |
| L0F57_RS10845 () | 2195943..2196175 | + | 233 | Protein_2126 | helix-turn-helix domain-containing protein | - |
| L0F57_RS10850 () | 2196502..2197116 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| L0F57_RS10855 () | 2197126..2197284 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| L0F57_RS10860 () | 2197417..2198331 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| L0F57_RS10865 () | 2199644..2200066 | - | 423 | Protein_2130 | hypothetical protein ; Integrase | Integrase |
| L0F57_RS10870 () | 2200136..2201330 | + | 1195 | Protein_2131 | IS256 family transposase IS285 | Transposase |
| L0F57_RS10875 () | 2201476..2201616 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| L0F57_RS10880 () | 2201782..2202051 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| L0F57_RS10885 () | 2202421..2202840 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| L0F57_RS10890 () | 2203228..2203704 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| L0F57_RS10895 () | 2204034..2204429 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| L0F57_RS10900 () | 2205112..2205834 | + | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| L0F57_RS10905 () | 2206119..2206283 | + | 165 | WP_001134856.1 | membrane protein | - |
| L0F57_RS10910 () | 2206507..2207157 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| L0F57_RS10915 () | 2207176..2207367 | - | 192 | WP_000457836.1 | YebW family protein | - |
| L0F57_RS10920 () | 2207478..2207714 | - | 237 | WP_024131108.1 | YebV family protein | - |
| L0F57_RS10925 () | 2207832..2209271 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| L0F57_RS10930 () | 2209349..2211982 | - | 2634 | WP_001535256.1 | hypothetical protein | VF |
| L0F57_RS10935 () | 2211951..2213234 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| L0F57_RS10940 () | 2213363..2213860 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| L0F57_RS10945 () | 2213958..2214644 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| L0F57_RS10950 () | 2214664..2216712 | + | 2049 | WP_033567178.1 | carboxy terminal-processing peptidase | - |
| L0F57_RS10955 () | 2216906..2217787 | + | 882 | WP_000984498.1 | protease HtpX | - |
| L0F57_RS10960 () | 2217835..2219208 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| L0F57_RS10965 () | 2219384..2220175 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| L0F57_RS10970 () | 2220387..2220626 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| L0F57_RS10975 () | 2220784..2220927 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| L0F57_RS10980 () | 2220998..2221285 | + | 288 | WP_001000660.1 | YebO family protein | - |
| L0F57_RS10985 () | 2221934..2222077 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| L0F57_RS10990 () | 2222090..2222299 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| L0F57_RS10995 () | 2222519..2224264 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| L0F57_RS11000 () | 2224330..2225139 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| L0F57_RS11005 () | 2225136..2225702 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| L0F57_RS11010 () | 2226112..2226570 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26047 | NC_016856 | 1954607..1985261 | 0.005 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0 |