MGE detailed information
MGE type: Prophage MGE length: 38318 bp
Accession: NZ_CP086118 Location: 2107109..2145426 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain S34 Replicon: chromosome
Accession: NZ_CP086118 Location: 2107109..2145426 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain S34 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLY43_RS10220 () | 2103382..2104023 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| LLY43_RS10225 () | 2104123..2105301 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| LLY43_RS10230 () | 2105432..2105722 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| LLY43_RS10235 () | 2105790..2106143 | + | 354 | WP_001042119.1 | protein YebF | - |
| LLY43_RS10240 () | 2106237..2106896 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| LLY43_RS10245 () | 2107109..2109160 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| LLY43_RS10250 () | 2109195..2109893 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| LLY43_RS10255 () | 2109917..2110573 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| LLY43_RS10260 () | 2110681..2110911 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| LLY43_RS10265 () | 2111049..2111423 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| LLY43_RS10270 () | 2111424..2112299 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| LLY43_RS10275 () | 2112316..2112669 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2112769..2112914 | - | 146 | - | - | Antitoxin Detail |
| - | 2112809..2112912 | + | 104 | - | - | Toxin Detail |
| LLY43_RS10280 () | 2113043..2113966 | - | 924 | Protein_2013 | tyrosine-type recombinase/integrase | - |
| LLY43_RS10285 () | 2114230..2114691 | - | 462 | Protein_2014 | DNA breaking-rejoining protein | - |
| LLY43_RS10290 () | 2114680..2114871 | + | 192 | Protein_2015 | glycoside hydrolase family 19 protein | - |
| LLY43_RS10295 () | 2114925..2115458 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| LLY43_RS10300 () | 2115715..2115882 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| LLY43_RS10305 () | 2115947..2116135 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| LLY43_RS10310 () | 2116190..2116450 | + | 261 | Protein_2019 | DUF1441 family protein | - |
| LLY43_RS10315 () | 2116665..2117009 | + | 345 | Protein_2020 | macro domain-containing protein | - |
| LLY43_RS10320 () | 2117019..2117489 | + | 471 | Protein_2021 | tail fiber assembly protein | - |
| LLY43_RS10325 () | 2117586..2117786 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| LLY43_RS10330 () | 2118176..2118356 | - | 181 | Protein_2023 | IS3 family transposase | - |
| LLY43_RS10335 () | 2118347..2118448 | + | 102 | Protein_2024 | arsenic transporter | - |
| LLY43_RS10340 () | 2119070..2119302 | + | 233 | Protein_2025 | helix-turn-helix domain-containing protein | - |
| LLY43_RS10345 () | 2119629..2120243 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| LLY43_RS10350 () | 2120253..2120411 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| LLY43_RS10355 () | 2120544..2121458 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| LLY43_RS10360 () | 2122771..2123193 | - | 423 | Protein_2029 | tyrosine-type recombinase/integrase | - |
| LLY43_RS10365 () | 2123263..2124457 | + | 1195 | Protein_2030 | IS256 family transposase | - |
| LLY43_RS10370 () | 2124603..2124743 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| LLY43_RS10375 () | 2124909..2125178 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| LLY43_RS10380 () | 2125548..2125967 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| LLY43_RS10385 () | 2126355..2126831 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| LLY43_RS10390 () | 2127161..2127556 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| LLY43_RS10395 () | 2128239..2128961 | + | 723 | WP_000182072.1 | SPI-1 type III secretion system guanine nucleotide exchange factor SopE2 | - |
| LLY43_RS10400 () | 2129246..2129410 | + | 165 | WP_001134856.1 | membrane protein | - |
| LLY43_RS10405 () | 2129634..2130284 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| LLY43_RS10410 () | 2130303..2130494 | - | 192 | WP_000457836.1 | YebW family protein | - |
| LLY43_RS10415 () | 2130605..2130841 | - | 237 | WP_024131108.1 | YebV family protein | - |
| LLY43_RS10420 () | 2130959..2132398 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LLY43_RS10425 () | 2132476..2135109 | - | 2634 | WP_001535256.1 | PqiB family protein | - |
| LLY43_RS10430 () | 2135078..2136361 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| LLY43_RS10435 () | 2136490..2136987 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| LLY43_RS10440 () | 2137085..2137771 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| LLY43_RS10445 () | 2137791..2139839 | + | 2049 | WP_033567178.1 | carboxy terminal-processing peptidase | - |
| LLY43_RS10450 () | 2140033..2140914 | + | 882 | WP_000984498.1 | protease HtpX | - |
| LLY43_RS10455 () | 2140962..2142335 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| LLY43_RS10460 () | 2142511..2143302 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| LLY43_RS10465 () | 2143514..2143753 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| LLY43_RS10470 () | 2143911..2144054 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| LLY43_RS10475 () | 2144125..2144412 | + | 288 | WP_001000660.1 | YebO family protein | - |
| LLY43_RS10480 () | 2145061..2145204 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| LLY43_RS10485 () | 2145217..2145426 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| LLY43_RS10490 () | 2145646..2147391 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| LLY43_RS10495 () | 2147457..2148266 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| LLY43_RS10500 () | 2148263..2148829 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| LLY43_RS10505 () | 2149239..2149697 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26047 | NC_016856 | 1954607..1985261 | 0.005 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0 |