Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1933082..1933227 Replicon
Accession NC_022525
Organism Salmonella enterica subsp. enterica serovar Thompson str. RM6836

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1933084..1933187 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1933082..1933227 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
- 1933082..1933227 + 146 NuclAT_1 - Antitoxin
- 1933084..1933187 - 104 NuclT_0 - Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Prophage - sopE2 1910508..1938889 28381


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T30141 NC_022525:c1933187-1933084 [Salmonella enterica subsp. enterica serovar Thompson str. RM6836]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 146 bp

>AT30141 NC_022525:1933082-1933227 [Salmonella enterica subsp. enterica serovar Thompson str. RM6836]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References