MGE detailed information
MGE type: Prophage MGE length: 39995 bp
Accession: NZ_AP023289 Location: 2201777..2241771 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-3837 Replicon: chromosome
Accession: NZ_AP023289 Location: 2201777..2241771 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-3837 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5612_RS10785 () | 2197878..2199689 | + | 1812 | WP_001069113.1 | phosphogluconate dehydratase | - |
| K5612_RS10790 () | 2199727..2200368 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| K5612_RS10795 () | 2200468..2201646 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| K5612_RS10800 () | 2201777..2202067 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| K5612_RS10805 () | 2202135..2202488 | + | 354 | WP_001042119.1 | protein YebF | - |
| K5612_RS10810 () | 2202582..2203241 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| K5612_RS10815 () | 2203454..2205505 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| K5612_RS10820 () | 2205540..2206238 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| K5612_RS10825 () | 2206262..2206918 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| K5612_RS10830 () | 2207026..2207256 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| K5612_RS10835 () | 2207394..2207768 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| K5612_RS10840 () | 2207769..2208644 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| K5612_RS10845 () | 2208661..2209014 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2209114..2209259 | - | 146 | - | - | Antitoxin Detail |
| - | 2209154..2209257 | + | 104 | - | - | Toxin Detail |
| K5612_RS10850 () | 2209388..2210311 | - | 924 | Protein_2136 | hypothetical protein ; Integrase | Integrase |
| K5612_RS24515 () | 2210575..2211036 | - | 462 | Protein_2137 | DNA breaking-rejoining protein | - |
| K5612_RS10860 () | 2211025..2211216 | + | 192 | Protein_2138 | glycoside hydrolase family 19 protein | - |
| K5612_RS10865 () | 2211270..2211803 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| K5612_RS10870 () | 2212060..2212227 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| K5612_RS10875 () | 2212535..2212795 | + | 261 | Protein_2141 | DUF1441 family protein | - |
| K5612_RS10880 () | 2213010..2213354 | + | 345 | Protein_2142 | macro domain-containing protein | - |
| K5612_RS10885 () | 2213364..2213834 | + | 471 | Protein_2143 | tail fiber assembly protein | - |
| K5612_RS10890 () | 2213931..2214131 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| K5612_RS24520 () | 2214521..2214701 | - | 181 | Protein_2145 | IS3 family transposase | - |
| K5612_RS10895 () | 2214701..2214826 | + | 126 | WP_000457876.1 | hypothetical protein | - |
| K5612_RS24525 () | 2215415..2215647 | + | 233 | Protein_2147 | helix-turn-helix domain-containing protein | - |
| K5612_RS10910 () | 2215974..2216588 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| K5612_RS10915 () | 2216598..2216756 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| K5612_RS10920 () | 2216889..2217803 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| K5612_RS10925 () | 2219116..2219538 | - | 423 | Protein_2151 | hypothetical protein ; Integrase | Integrase |
| K5612_RS10930 () | 2219608..2220802 | + | 1195 | Protein_2152 | IS256 family transposase IS285 | Transposase |
| K5612_RS10935 () | 2220948..2221088 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| K5612_RS10940 () | 2221254..2221523 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| K5612_RS10945 () | 2221893..2222312 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| K5612_RS10950 () | 2222700..2223176 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| K5612_RS10955 () | 2223506..2223901 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| K5612_RS10960 () | 2224584..2225306 | + | 723 | WP_000182072.1 | hypothetical protein | VF |
| K5612_RS10965 () | 2225591..2225755 | + | 165 | WP_001134856.1 | membrane protein | - |
| K5612_RS10970 () | 2225979..2226629 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| K5612_RS10975 () | 2226648..2226839 | - | 192 | WP_000457836.1 | YebW family protein | - |
| K5612_RS10980 () | 2226950..2227186 | - | 237 | WP_024131108.1 | YebV family protein | - |
| K5612_RS10985 () | 2227304..2228743 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| K5612_RS10990 () | 2228821..2231454 | - | 2634 | WP_001535256.1 | hypothetical protein | VF |
| K5612_RS10995 () | 2231423..2232706 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| K5612_RS11000 () | 2232835..2233332 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| K5612_RS11005 () | 2233430..2234116 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| K5612_RS11010 () | 2234136..2236184 | + | 2049 | WP_033567178.1 | carboxy terminal-processing peptidase | - |
| K5612_RS11015 () | 2236378..2237259 | + | 882 | WP_000984498.1 | protease HtpX | - |
| K5612_RS11020 () | 2237307..2238680 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| K5612_RS11025 () | 2238856..2239647 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| K5612_RS11030 () | 2239859..2240098 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| K5612_RS11035 () | 2240256..2240399 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| K5612_RS11040 () | 2240470..2240757 | + | 288 | WP_001000660.1 | YebO family protein | - |
| K5612_RS11045 () | 2241406..2241549 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| K5612_RS11050 () | 2241562..2241771 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| K5612_RS11055 () | 2241991..2243736 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| K5612_RS11060 () | 2243802..2244611 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| K5612_RS11065 () | 2244608..2245174 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| K5612_RS11070 () | 2245584..2246042 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26047 | NC_016856 | 1954607..1985261 | 0.007 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0.001 |