MGE detailed information
MGE type: Prophage MGE length: 38310 bp
Accession: NZ_CP067397 Location: 1936204..1974513 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain LB5000 Replicon: chromosome
Accession: NZ_CP067397 Location: 1936204..1974513 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain LB5000 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJB81_RS09425 () | 1931933..1932403 | + | 471 | WP_000156281.1 | DUF986 family protein | - |
| JJB81_RS09430 () | 1932801..1933367 | + | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| JJB81_RS09435 () | 1933364..1934173 | - | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| JJB81_RS09440 () | 1934239..1935984 | - | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| JJB81_RS09445 () | 1936204..1936413 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| JJB81_RS09450 () | 1936426..1936569 | - | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| JJB81_RS09455 () | 1937218..1937505 | - | 288 | WP_001000660.1 | YebO family protein | - |
| JJB81_RS09460 () | 1937576..1937719 | - | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| JJB81_RS09465 () | 1937877..1938116 | + | 240 | WP_001236777.1 | invasion protein YobH | - |
| JJB81_RS09470 () | 1938328..1939119 | - | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| JJB81_RS09475 () | 1939295..1940668 | + | 1374 | WP_000416127.1 | MFS transporter | - |
| JJB81_RS09480 () | 1940716..1941597 | - | 882 | WP_000984498.1 | protease HtpX | - |
| JJB81_RS09485 () | 1941791..1943839 | - | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| JJB81_RS09490 () | 1943859..1944545 | - | 687 | WP_210138948.1 | RNA chaperone ProQ | - |
| JJB81_RS09495 () | 1944643..1945140 | - | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| JJB81_RS09500 () | 1945269..1946552 | + | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| JJB81_RS09505 () | 1946521..1949154 | + | 2634 | WP_001535256.1 | hypothetical protein | VF |
| JJB81_RS09510 () | 1949232..1950671 | + | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JJB81_RS09515 () | 1950789..1951025 | + | 237 | WP_024131108.1 | YebV family protein | - |
| JJB81_RS09520 () | 1951136..1951327 | + | 192 | WP_000457836.1 | YebW family protein | - |
| JJB81_RS09525 () | 1951346..1951996 | - | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| JJB81_RS09530 () | 1952220..1952384 | - | 165 | WP_001134856.1 | membrane protein | - |
| JJB81_RS09535 () | 1952669..1953391 | - | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| JJB81_RS09540 () | 1954075..1954470 | + | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| JJB81_RS09545 () | 1954800..1955276 | + | 477 | WP_000030934.1 | hypothetical protein | - |
| JJB81_RS09550 () | 1955664..1956083 | - | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| JJB81_RS09555 () | 1956453..1956722 | + | 270 | WP_001752421.1 | hypothetical protein | - |
| JJB81_RS09560 () | 1956888..1957028 | + | 141 | WP_001617922.1 | hypothetical protein | - |
| JJB81_RS09565 () | 1957174..1958368 | - | 1195 | Protein_1875 | IS256 family transposase IS285 | Transposase |
| JJB81_RS09570 () | 1958438..1958860 | + | 423 | Protein_1876 | hypothetical protein ; Integrase | Integrase |
| JJB81_RS09575 () | 1960164..1961078 | + | 915 | WP_001233446.1 | DMT family transporter | - |
| JJB81_RS09580 () | 1961211..1961369 | + | 159 | WP_000480735.1 | DUF5993 family protein | - |
| JJB81_RS09585 () | 1961379..1961993 | + | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| JJB81_RS23765 () | 1962320..1962487 | - | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| JJB81_RS23915 () | 1962481..1962627 | + | 147 | WP_001520350.1 | hypothetical protein | - |
| JJB81_RS09600 () | 1963141..1963266 | - | 126 | WP_000457876.1 | hypothetical protein | - |
| JJB81_RS23770 () | 1963266..1963446 | + | 181 | Protein_1883 | IS3 family transposase | - |
| JJB81_RS09605 () | 1963836..1964036 | + | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| JJB81_RS23775 () | 1964133..1964603 | - | 471 | Protein_1885 | tail fiber assembly protein | - |
| JJB81_RS23780 () | 1964613..1964957 | - | 345 | Protein_1886 | macro domain-containing protein | - |
| JJB81_RS09615 () | 1965172..1965432 | - | 261 | Protein_1887 | DUF1441 family protein | - |
| JJB81_RS09620 () | 1965487..1965675 | + | 189 | WP_001521334.1 | hypothetical protein | - |
| JJB81_RS09625 () | 1965740..1965907 | + | 168 | WP_000789530.1 | lytic enzyme | - |
| JJB81_RS09630 () | 1966164..1966697 | - | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| JJB81_RS09635 () | 1966751..1966942 | - | 192 | Protein_1891 | glycoside hydrolase family 19 protein | - |
| JJB81_RS23785 () | 1966931..1967392 | + | 462 | Protein_1892 | DNA breaking-rejoining protein | - |
| JJB81_RS09645 () | 1967656..1968579 | + | 924 | Protein_1893 | hypothetical protein ; Integrase | Integrase |
| - | 1968708..1968853 | + | 146 | - | - | Antitoxin Detail |
| - | 1968710..1968813 | - | 104 | - | - | Toxin Detail |
| JJB81_RS09650 () | 1968953..1969306 | - | 354 | WP_000722368.1 | YebY family protein | - |
| JJB81_RS09655 () | 1969323..1970198 | - | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| JJB81_RS09660 () | 1970199..1970573 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| JJB81_RS09665 () | 1970711..1970941 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| JJB81_RS09670 () | 1971049..1971705 | + | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| JJB81_RS09675 () | 1971729..1972427 | + | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| JJB81_RS09680 () | 1972462..1974513 | - | 2052 | WP_000936999.1 | oligopeptidase B | - |
| JJB81_RS09685 () | 1974726..1975385 | - | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| JJB81_RS09690 () | 1975479..1975832 | - | 354 | WP_001042119.1 | protein YebF | - |
| JJB81_RS09695 () | 1975900..1976190 | - | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| JJB81_RS09700 () | 1976321..1977499 | + | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| JJB81_RS09705 () | 1977599..1978240 | - | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26047 | NC_016856 | 1954607..1985261 | 0.005 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0 |