MGE detailed information
MGE type: Prophage MGE length: 38317 bp
Accession: NZ_AP023292 Location: 2082074..2120390 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4233 Replicon: chromosome
Accession: NZ_AP023292 Location: 2082074..2120390 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4233 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5617_RS10130 () | 2078347..2078988 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| K5617_RS10135 () | 2079088..2080266 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| K5617_RS10140 () | 2080397..2080687 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| K5617_RS10145 () | 2080755..2081108 | + | 354 | WP_001042119.1 | protein YebF | - |
| K5617_RS10150 () | 2081202..2081861 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| K5617_RS10155 () | 2082074..2084125 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| K5617_RS10160 () | 2084160..2084858 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| K5617_RS10165 () | 2084882..2085538 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| K5617_RS10170 () | 2085646..2085876 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| K5617_RS10175 () | 2086014..2086388 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| K5617_RS10180 () | 2086389..2087264 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| K5617_RS10185 () | 2087281..2087634 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2087734..2087879 | - | 146 | - | - | Antitoxin Detail |
| - | 2087774..2087877 | + | 104 | - | - | Toxin Detail |
| K5617_RS10190 () | 2088008..2088931 | - | 924 | Protein_2002 | hypothetical protein ; Integrase | Integrase |
| K5617_RS24015 () | 2089195..2089656 | - | 462 | Protein_2003 | DNA breaking-rejoining protein | - |
| K5617_RS10200 () | 2089645..2089836 | + | 192 | Protein_2004 | glycoside hydrolase family 19 protein | - |
| K5617_RS10205 () | 2089890..2090423 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| K5617_RS10210 () | 2090680..2090847 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| K5617_RS10215 () | 2090912..2091100 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| K5617_RS10220 () | 2091155..2091415 | + | 261 | Protein_2008 | DUF1441 family protein | - |
| K5617_RS10225 () | 2091630..2091974 | + | 345 | Protein_2009 | macro domain-containing protein | - |
| K5617_RS10230 () | 2091984..2092454 | + | 471 | Protein_2010 | tail fiber assembly protein | - |
| K5617_RS10235 () | 2092551..2092751 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| K5617_RS24020 () | 2093141..2093321 | - | 181 | Protein_2012 | IS3 family transposase | - |
| K5617_RS10240 () | 2093312..2093413 | + | 102 | Protein_2013 | arsenic transporter | - |
| K5617_RS24025 () | 2094035..2094267 | + | 233 | Protein_2014 | helix-turn-helix domain-containing protein | - |
| K5617_RS10255 () | 2094594..2095208 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| K5617_RS10260 () | 2095218..2095376 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| K5617_RS10265 () | 2095509..2096423 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| K5617_RS10270 () | 2097736..2098158 | - | 423 | Protein_2018 | hypothetical protein ; Integrase | Integrase |
| K5617_RS10275 () | 2098228..2099422 | + | 1195 | Protein_2019 | IS256 family transposase IS285 | Transposase |
| K5617_RS10280 () | 2099568..2099708 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| K5617_RS10285 () | 2099874..2100143 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| K5617_RS10290 () | 2100513..2100932 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| K5617_RS10295 () | 2101320..2101796 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| K5617_RS10300 () | 2102126..2102521 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| K5617_RS10305 () | 2103204..2103926 | + | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| K5617_RS10310 () | 2104211..2104375 | + | 165 | WP_001134856.1 | membrane protein | - |
| K5617_RS10315 () | 2104599..2105249 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| K5617_RS10320 () | 2105268..2105459 | - | 192 | WP_000457836.1 | YebW family protein | - |
| K5617_RS10325 () | 2105570..2105806 | - | 237 | WP_024131108.1 | YebV family protein | - |
| K5617_RS10330 () | 2105924..2107363 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| K5617_RS10335 () | 2107441..2110074 | - | 2634 | WP_001535256.1 | hypothetical protein | VF |
| K5617_RS10340 () | 2110043..2111326 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| K5617_RS10345 () | 2111455..2111952 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| K5617_RS10350 () | 2112050..2112736 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| K5617_RS10355 () | 2112756..2114804 | + | 2049 | WP_033567178.1 | carboxy terminal-processing peptidase | - |
| K5617_RS10360 () | 2114997..2115878 | + | 882 | WP_000984498.1 | protease HtpX | - |
| K5617_RS10365 () | 2115926..2117299 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| K5617_RS10370 () | 2117475..2118266 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| K5617_RS10375 () | 2118478..2118717 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| K5617_RS10380 () | 2118875..2119018 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| K5617_RS10385 () | 2119089..2119376 | + | 288 | WP_001000660.1 | YebO family protein | - |
| K5617_RS10390 () | 2120025..2120168 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| K5617_RS10395 () | 2120181..2120390 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| K5617_RS10400 () | 2120610..2122355 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| K5617_RS10405 () | 2122421..2123230 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| K5617_RS10410 () | 2123227..2123793 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| K5617_RS10415 () | 2124203..2124661 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26047 | NC_016856 | 1954607..1985261 | 0.005 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0 |