Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2087966..2088111 | Replicon | chromosome |
| Accession | NZ_AP023311 | ||
| Organism | Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4596 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2088006..2088109 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2087966..2088111 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5674_RS10165 | 2084392..2085090 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| K5674_RS10170 | 2085114..2085770 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| K5674_RS10175 | 2085878..2086108 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| K5674_RS10180 | 2086246..2086620 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| K5674_RS10185 | 2086621..2087496 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| K5674_RS10190 | 2087513..2087866 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2087966..2088111 | - | 146 | - | - | Antitoxin |
| - | 2088006..2088109 | + | 104 | - | - | Toxin |
| K5674_RS10195 | 2088240..2089163 | - | 924 | Protein_2003 | tyrosine-type recombinase/integrase | - |
| K5674_RS25215 | 2089427..2089888 | - | 462 | Protein_2004 | DNA breaking-rejoining protein | - |
| K5674_RS10205 | 2089877..2090068 | + | 192 | Protein_2005 | glycoside hydrolase family 19 protein | - |
| K5674_RS10210 | 2090122..2090655 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| K5674_RS10215 | 2090912..2091079 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| K5674_RS10220 | 2091144..2091332 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| K5674_RS10225 | 2091387..2091647 | + | 261 | Protein_2009 | DUF1441 family protein | - |
| K5674_RS10230 | 2091862..2092206 | + | 345 | Protein_2010 | macro domain-containing protein | - |
| K5674_RS10235 | 2092216..2092686 | + | 471 | Protein_2011 | tail fiber assembly protein | - |
| K5674_RS10240 | 2092783..2092983 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| inside | Prophage | - | sopE2 | 2084392..2105691 | 21299 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T37479 NZ_AP023311:2088006-2088109 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT37479 NZ_AP023311:c2088111-2087966 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
