MGE detailed information
MGE type: Prophage MGE length: 38317 bp
Accession: NZ_AP023313 Location: 2073537..2111853 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4605 Replicon: chromosome
Accession: NZ_AP023313 Location: 2073537..2111853 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4605 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5670_RS10075 () | 2069810..2070451 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| K5670_RS10080 () | 2070551..2071729 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| K5670_RS10085 () | 2071860..2072150 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| K5670_RS10090 () | 2072218..2072571 | + | 354 | WP_001042119.1 | protein YebF | - |
| K5670_RS10095 () | 2072665..2073324 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| K5670_RS10100 () | 2073537..2075588 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| K5670_RS10105 () | 2075623..2076321 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| K5670_RS10110 () | 2076345..2077001 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| K5670_RS10115 () | 2077109..2077339 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| K5670_RS10120 () | 2077477..2077851 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| K5670_RS10125 () | 2077852..2078727 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| K5670_RS10130 () | 2078744..2079097 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2079197..2079342 | - | 146 | - | - | Antitoxin Detail |
| - | 2079237..2079340 | + | 104 | - | - | Toxin Detail |
| K5670_RS10135 () | 2079471..2080394 | - | 924 | Protein_1991 | hypothetical protein ; Integrase | Integrase |
| K5670_RS24490 () | 2080658..2081119 | - | 462 | Protein_1992 | DNA breaking-rejoining protein | - |
| K5670_RS10145 () | 2081108..2081299 | + | 192 | Protein_1993 | glycoside hydrolase family 19 protein | - |
| K5670_RS10150 () | 2081353..2081886 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| K5670_RS10155 () | 2082143..2082310 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| K5670_RS10160 () | 2082375..2082563 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| K5670_RS10165 () | 2082618..2082878 | + | 261 | Protein_1997 | DUF1441 family protein | - |
| K5670_RS10170 () | 2083093..2083437 | + | 345 | Protein_1998 | macro domain-containing protein | - |
| K5670_RS10175 () | 2083447..2083917 | + | 471 | Protein_1999 | tail fiber assembly protein | - |
| K5670_RS10180 () | 2084014..2084214 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| K5670_RS24495 () | 2084604..2084784 | - | 181 | Protein_2001 | IS3 family transposase | - |
| K5670_RS10185 () | 2084775..2084876 | + | 102 | Protein_2002 | arsenic transporter | - |
| K5670_RS24500 () | 2085498..2085730 | + | 233 | Protein_2003 | helix-turn-helix domain-containing protein | - |
| K5670_RS10200 () | 2086057..2086671 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| K5670_RS10205 () | 2086681..2086839 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| K5670_RS10210 () | 2086972..2087886 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| K5670_RS10215 () | 2089199..2089621 | - | 423 | Protein_2007 | hypothetical protein ; Integrase | Integrase |
| K5670_RS10220 () | 2089691..2090885 | + | 1195 | Protein_2008 | IS256 family transposase IS285 | Transposase |
| K5670_RS10225 () | 2091031..2091171 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| K5670_RS10230 () | 2091337..2091606 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| K5670_RS10235 () | 2091976..2092395 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| K5670_RS10240 () | 2092783..2093259 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| K5670_RS10245 () | 2093589..2093984 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| K5670_RS10250 () | 2094667..2095389 | + | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| K5670_RS10255 () | 2095674..2095838 | + | 165 | WP_001134856.1 | membrane protein | - |
| K5670_RS10260 () | 2096062..2096712 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| K5670_RS10265 () | 2096731..2096922 | - | 192 | WP_000457836.1 | YebW family protein | - |
| K5670_RS10270 () | 2097033..2097269 | - | 237 | WP_024131108.1 | YebV family protein | - |
| K5670_RS10275 () | 2097387..2098826 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| K5670_RS10280 () | 2098904..2101537 | - | 2634 | WP_001535256.1 | hypothetical protein | VF |
| K5670_RS10285 () | 2101506..2102789 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| K5670_RS10290 () | 2102918..2103415 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| K5670_RS10295 () | 2103513..2104199 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| K5670_RS10300 () | 2104219..2106267 | + | 2049 | WP_033567178.1 | carboxy terminal-processing peptidase | - |
| K5670_RS10305 () | 2106460..2107341 | + | 882 | WP_000984498.1 | protease HtpX | - |
| K5670_RS10310 () | 2107389..2108762 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| K5670_RS10315 () | 2108938..2109729 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| K5670_RS10320 () | 2109941..2110180 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| K5670_RS10325 () | 2110338..2110481 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| K5670_RS10330 () | 2110552..2110839 | + | 288 | WP_001000660.1 | YebO family protein | - |
| K5670_RS10335 () | 2111488..2111631 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| K5670_RS10340 () | 2111644..2111853 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| K5670_RS10345 () | 2112073..2113818 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| K5670_RS10350 () | 2113884..2114693 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| K5670_RS10355 () | 2114690..2115256 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| K5670_RS10360 () | 2115666..2116124 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26047 | NC_016856 | 1954607..1985261 | 0.005 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0 |