MGE detailed information
MGE type: Prophage MGE length: 38319 bp
Accession: NZ_CP116042 Location: 2122355..2160673 Organism: Salmonella enterica subsp. enterica serovar 14[5]12:i:- strain BL708 Replicon: chromosome
Accession: NZ_CP116042 Location: 2122355..2160673 Organism: Salmonella enterica subsp. enterica serovar 14[5]12:i:- strain BL708 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PGC28_RS10415 () | 2118628..2119269 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| PGC28_RS10420 () | 2119369..2120547 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PGC28_RS10425 () | 2120678..2120968 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| PGC28_RS10430 () | 2121036..2121389 | + | 354 | WP_001042119.1 | protein YebF | - |
| PGC28_RS10435 () | 2121483..2122142 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| PGC28_RS10440 () | 2122355..2124406 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| PGC28_RS10445 () | 2124441..2125139 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| PGC28_RS10450 () | 2125163..2125819 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| PGC28_RS10455 () | 2125927..2126157 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PGC28_RS10460 () | 2126295..2126669 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| PGC28_RS10465 () | 2126670..2127545 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| PGC28_RS10470 () | 2127562..2127915 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2128015..2128160 | - | 146 | - | - | Antitoxin Detail |
| - | 2128055..2128158 | + | 104 | - | - | Toxin Detail |
| PGC28_RS10475 () | 2128289..2129212 | - | 924 | Protein_2049 | hypothetical protein ; Integrase | Integrase |
| PGC28_RS10480 () | 2129476..2129937 | - | 462 | Protein_2050 | DNA breaking-rejoining protein | - |
| PGC28_RS10485 () | 2129926..2130117 | + | 192 | Protein_2051 | glycoside hydrolase family 19 protein | - |
| PGC28_RS10490 () | 2130171..2130704 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| PGC28_RS10495 () | 2130961..2131128 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| PGC28_RS10500 () | 2131193..2131381 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| PGC28_RS10505 () | 2131436..2131696 | + | 261 | Protein_2055 | DUF1441 family protein | - |
| PGC28_RS10510 () | 2131911..2132255 | + | 345 | Protein_2056 | macro domain-containing protein | - |
| PGC28_RS10515 () | 2132265..2132735 | + | 471 | Protein_2057 | tail fiber assembly protein | - |
| PGC28_RS10520 () | 2132832..2133032 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| PGC28_RS10525 () | 2133422..2133602 | - | 181 | Protein_2059 | IS3 family transposase | - |
| PGC28_RS10530 () | 2133602..2133727 | + | 126 | WP_000457876.1 | hypothetical protein | - |
| PGC28_RS10535 () | 2134241..2134387 | - | 147 | WP_001520350.1 | hypothetical protein | - |
| PGC28_RS10540 () | 2134381..2134548 | + | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| PGC28_RS10545 () | 2134875..2135489 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| PGC28_RS10550 () | 2135499..2135657 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| PGC28_RS10555 () | 2135790..2136704 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| PGC28_RS10560 () | 2138017..2138439 | - | 423 | Protein_2066 | hypothetical protein ; Integrase | Integrase |
| PGC28_RS10565 () | 2138509..2139703 | + | 1195 | Protein_2067 | IS256 family transposase IS285 | Transposase |
| PGC28_RS10570 () | 2139849..2139989 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| PGC28_RS10575 () | 2140155..2140424 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| PGC28_RS10580 () | 2140794..2141213 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| PGC28_RS10585 () | 2141601..2142077 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| PGC28_RS10590 () | 2142407..2142802 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| PGC28_RS10595 () | 2143486..2144208 | + | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| PGC28_RS10600 () | 2144493..2144657 | + | 165 | WP_001134856.1 | membrane protein | - |
| PGC28_RS10605 () | 2144881..2145531 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| PGC28_RS10610 () | 2145550..2145741 | - | 192 | WP_000457836.1 | YebW family protein | - |
| PGC28_RS10615 () | 2145852..2146088 | - | 237 | WP_024131108.1 | YebV family protein | - |
| PGC28_RS10620 () | 2146206..2147645 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PGC28_RS10625 () | 2147723..2150356 | - | 2634 | WP_001535256.1 | Intermembrane transport protein YebT | VF |
| PGC28_RS10630 () | 2150325..2151608 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| PGC28_RS10635 () | 2151737..2152234 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| PGC28_RS10640 () | 2152332..2153018 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| PGC28_RS10645 () | 2153038..2155086 | + | 2049 | WP_033567178.1 | carboxy terminal-processing peptidase | - |
| PGC28_RS10650 () | 2155280..2156161 | + | 882 | WP_000984498.1 | protease HtpX | - |
| PGC28_RS10655 () | 2156209..2157582 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| PGC28_RS10660 () | 2157758..2158549 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| PGC28_RS10665 () | 2158761..2159000 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| PGC28_RS10670 () | 2159158..2159301 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| PGC28_RS10675 () | 2159372..2159659 | + | 288 | WP_001000660.1 | YebO family protein | - |
| PGC28_RS10680 () | 2160308..2160451 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| PGC28_RS10685 () | 2160464..2160673 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| PGC28_RS10690 () | 2160893..2162638 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| PGC28_RS10695 () | 2162704..2163513 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| PGC28_RS10700 () | 2163510..2164076 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| PGC28_RS10705 () | 2164486..2164944 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26047 | NC_016856 | 1954607..1985261 | 0.005 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0 |