MGE detailed information
MGE type: Prophage MGE length: 28001 bp
Accession: NZ_CP090533 Location: 2609961..2637961 Organism: Salmonella enterica strain 2017005-SE Replicon: chromosome
Accession: NZ_CP090533 Location: 2609961..2637961 Organism: Salmonella enterica strain 2017005-SE Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L0F61_RS12830 () | 2605231..2607279 | - | 2049 | WP_033567178.1 | carboxy terminal-processing peptidase | - |
| L0F61_RS12835 () | 2607299..2607985 | - | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| L0F61_RS12840 () | 2608083..2608580 | - | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| L0F61_RS12845 () | 2608709..2609992 | + | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| L0F61_RS12850 () | 2609961..2612594 | + | 2634 | WP_001535256.1 | hypothetical protein | VF |
| L0F61_RS12855 () | 2612672..2614111 | + | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| L0F61_RS12860 () | 2614229..2614465 | + | 237 | WP_024131108.1 | YebV family protein | - |
| L0F61_RS12865 () | 2614576..2614767 | + | 192 | WP_000457836.1 | YebW family protein | - |
| L0F61_RS12870 () | 2614786..2615436 | - | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| L0F61_RS12875 () | 2615660..2615824 | - | 165 | WP_001134856.1 | membrane protein | - |
| L0F61_RS12880 () | 2616109..2616831 | - | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| L0F61_RS12885 () | 2617514..2617909 | + | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| L0F61_RS12890 () | 2618239..2618715 | + | 477 | WP_000030934.1 | hypothetical protein | - |
| L0F61_RS12895 () | 2619103..2619522 | - | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| L0F61_RS12900 () | 2619892..2620161 | + | 270 | WP_001752421.1 | hypothetical protein | - |
| L0F61_RS12905 () | 2620327..2620467 | + | 141 | WP_001617922.1 | hypothetical protein | - |
| L0F61_RS12910 () | 2620613..2621807 | - | 1195 | Protein_2520 | IS256 family transposase IS285 | Transposase |
| L0F61_RS12915 () | 2621877..2622299 | + | 423 | Protein_2521 | hypothetical protein ; Integrase | Integrase |
| L0F61_RS12920 () | 2623612..2624526 | + | 915 | WP_001233446.1 | DMT family transporter | - |
| L0F61_RS12925 () | 2624659..2624817 | + | 159 | WP_000480735.1 | DUF5993 family protein | - |
| L0F61_RS12930 () | 2624827..2625441 | + | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| L0F61_RS12935 () | 2625768..2626000 | - | 233 | Protein_2525 | helix-turn-helix domain-containing protein | - |
| L0F61_RS12940 () | 2626589..2626714 | - | 126 | WP_000457876.1 | hypothetical protein | - |
| L0F61_RS12945 () | 2626714..2626894 | + | 181 | Protein_2527 | IS3 family transposase | - |
| L0F61_RS12950 () | 2627284..2627484 | + | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| L0F61_RS12955 () | 2627581..2628051 | - | 471 | Protein_2529 | tail fiber assembly protein | - |
| L0F61_RS12960 () | 2628061..2628405 | - | 345 | Protein_2530 | macro domain-containing protein | - |
| L0F61_RS12965 () | 2628620..2628880 | - | 261 | Protein_2531 | DUF1441 family protein | - |
| L0F61_RS12970 () | 2628935..2629123 | + | 189 | WP_001521334.1 | hypothetical protein | - |
| L0F61_RS12975 () | 2629188..2629355 | + | 168 | WP_000789530.1 | lytic enzyme | - |
| L0F61_RS12980 () | 2629612..2630145 | - | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| L0F61_RS12985 () | 2630199..2630390 | - | 192 | Protein_2535 | glycoside hydrolase family 19 protein | - |
| L0F61_RS12990 () | 2630379..2630840 | + | 462 | Protein_2536 | DNA breaking-rejoining protein | - |
| L0F61_RS12995 () | 2631104..2632027 | + | 924 | Protein_2537 | hypothetical protein ; Integrase | Integrase |
| - | 2632156..2632301 | + | 146 | - | - | Antitoxin Detail |
| - | 2632158..2632261 | - | 104 | - | - | Toxin Detail |
| L0F61_RS13000 () | 2632401..2632754 | - | 354 | WP_000722368.1 | YebY family protein | - |
| L0F61_RS13005 () | 2632771..2633646 | - | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| L0F61_RS13010 () | 2633647..2634021 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| L0F61_RS13015 () | 2634159..2634389 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| L0F61_RS13020 () | 2634497..2635153 | + | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| L0F61_RS13025 () | 2635177..2635875 | + | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| L0F61_RS13030 () | 2635910..2637961 | - | 2052 | WP_000936999.1 | oligopeptidase B | - |
| L0F61_RS13035 () | 2638174..2638833 | - | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| L0F61_RS13040 () | 2638927..2639280 | - | 354 | WP_001042119.1 | protein YebF | - |
| L0F61_RS13045 () | 2639348..2639638 | - | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| L0F61_RS13050 () | 2639769..2640947 | + | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| L0F61_RS13055 () | 2641047..2641688 | - | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0.008 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26047 | NC_016856 | 1954607..1985261 | 0.003 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0.008 |