MGE detailed information
MGE type: Prophage MGE length: 39995 bp
Accession: NZ_CP047555 Location: 3988931..4028925 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10112 Replicon: chromosome
Accession: NZ_CP047555 Location: 3988931..4028925 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10112 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DXN18_RS19405 () | 3984660..3985118 | + | 459 | WP_000156280.1 | DUF986 family protein | - |
| DXN18_RS19410 () | 3985528..3986094 | + | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| DXN18_RS19415 () | 3986091..3986900 | - | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| DXN18_RS19420 () | 3986966..3988711 | - | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| DXN18_RS19425 () | 3988931..3989140 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| DXN18_RS19430 () | 3989153..3989296 | - | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| DXN18_RS19435 () | 3989945..3990232 | - | 288 | WP_001000660.1 | YebO family protein | - |
| DXN18_RS19440 () | 3990303..3990446 | - | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| DXN18_RS19445 () | 3990604..3990843 | + | 240 | WP_001236777.1 | invasion protein YobH | - |
| DXN18_RS19450 () | 3991055..3991846 | - | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| DXN18_RS19455 () | 3992022..3993395 | + | 1374 | WP_000416128.1 | MFS transporter | - |
| DXN18_RS19460 () | 3993443..3994324 | - | 882 | WP_000984498.1 | protease HtpX | - |
| DXN18_RS19465 () | 3994518..3996566 | - | 2049 | WP_033567178.1 | carboxy terminal-processing peptidase | - |
| DXN18_RS19470 () | 3996586..3997272 | - | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| DXN18_RS19475 () | 3997370..3997867 | - | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| DXN18_RS19480 () | 3997996..3999279 | + | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| DXN18_RS19485 () | 3999248..4001881 | + | 2634 | WP_001535256.1 | hypothetical protein | VF |
| DXN18_RS19490 () | 4001959..4003398 | + | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DXN18_RS19495 () | 4003516..4003752 | + | 237 | WP_024131108.1 | YebV family protein | - |
| DXN18_RS19500 () | 4003863..4004054 | + | 192 | WP_000457836.1 | YebW family protein | - |
| DXN18_RS19505 () | 4004073..4004723 | - | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| DXN18_RS19510 () | 4004947..4005111 | - | 165 | WP_001134856.1 | membrane protein | - |
| DXN18_RS19515 () | 4005396..4006118 | - | 723 | WP_000182072.1 | hypothetical protein | VF |
| DXN18_RS19520 () | 4006801..4007196 | + | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| DXN18_RS19525 () | 4007526..4008002 | + | 477 | WP_000030934.1 | hypothetical protein | - |
| DXN18_RS19530 () | 4008390..4008809 | - | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| DXN18_RS19535 () | 4009179..4009448 | + | 270 | WP_001752421.1 | hypothetical protein | - |
| DXN18_RS19540 () | 4009614..4009754 | + | 141 | WP_001617922.1 | hypothetical protein | - |
| DXN18_RS19545 () | 4009900..4011094 | - | 1195 | Protein_3810 | IS256 family transposase IS285 | Transposase |
| DXN18_RS19550 () | 4011164..4011586 | + | 423 | Protein_3811 | hypothetical protein ; Integrase | Integrase |
| DXN18_RS19555 () | 4012899..4013813 | + | 915 | WP_001233446.1 | DMT family transporter | - |
| DXN18_RS19560 () | 4013946..4014104 | + | 159 | WP_000480735.1 | DUF5993 family protein | - |
| DXN18_RS19565 () | 4014114..4014728 | + | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| DXN18_RS19570 () | 4015055..4015222 | - | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| DXN18_RS19575 () | 4015876..4016001 | - | 126 | WP_000457876.1 | hypothetical protein | - |
| DXN18_RS19580 () | 4016001..4016181 | + | 181 | Protein_3817 | IS3 family transposase | - |
| DXN18_RS19585 () | 4016571..4016771 | + | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| DXN18_RS19590 () | 4016868..4017338 | - | 471 | Protein_3819 | tail fiber assembly protein | - |
| DXN18_RS19595 () | 4017348..4017692 | - | 345 | Protein_3820 | macro domain-containing protein | - |
| DXN18_RS19600 () | 4017907..4018167 | - | 261 | Protein_3821 | DUF1441 family protein | - |
| DXN18_RS19605 () | 4018222..4018410 | + | 189 | WP_001521334.1 | hypothetical protein | - |
| DXN18_RS19610 () | 4018475..4018642 | + | 168 | WP_000789530.1 | lytic enzyme | - |
| DXN18_RS19615 () | 4018899..4019432 | - | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| DXN18_RS19620 () | 4019486..4019677 | - | 192 | Protein_3825 | glycoside hydrolase family 19 protein | - |
| DXN18_RS19625 () | 4019666..4020127 | + | 462 | Protein_3826 | DNA breaking-rejoining protein | - |
| DXN18_RS19630 () | 4020391..4021314 | + | 924 | Protein_3827 | hypothetical protein ; Integrase | Integrase |
| - | 4021443..4021588 | + | 146 | - | - | Antitoxin Detail |
| - | 4021445..4021548 | - | 104 | - | - | Toxin Detail |
| DXN18_RS19635 () | 4021688..4022041 | - | 354 | WP_000722368.1 | YebY family protein | - |
| DXN18_RS19640 () | 4022058..4022933 | - | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| DXN18_RS19645 () | 4022934..4023308 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| DXN18_RS19650 () | 4023446..4023676 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| DXN18_RS19655 () | 4023784..4024440 | + | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| DXN18_RS19660 () | 4024464..4025162 | + | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| DXN18_RS19665 () | 4025197..4027248 | - | 2052 | WP_000936999.1 | oligopeptidase B | - |
| DXN18_RS19670 () | 4027461..4028120 | - | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| DXN18_RS19675 () | 4028214..4028567 | - | 354 | WP_001042119.1 | protein YebF | - |
| DXN18_RS19680 () | 4028635..4028925 | - | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| DXN18_RS19685 () | 4029056..4030234 | + | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| DXN18_RS19690 () | 4030334..4030975 | - | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| DXN18_RS19695 () | 4031013..4032824 | - | 1812 | WP_001069113.1 | phosphogluconate dehydratase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26047 | NC_016856 | 1954607..1985261 | 0.007 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0.001 |