MGE detailed information
MGE type: Prophage MGE length: 38317 bp
Accession: NZ_AP023315 Location: 2081441..2119757 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4614 Replicon: chromosome
Accession: NZ_AP023315 Location: 2081441..2119757 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4614 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5684_RS10130 () | 2077714..2078355 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| K5684_RS10135 () | 2078455..2079633 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| K5684_RS10140 () | 2079764..2080054 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| K5684_RS10145 () | 2080122..2080475 | + | 354 | WP_001042119.1 | protein YebF | - |
| K5684_RS10150 () | 2080569..2081228 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| K5684_RS10155 () | 2081441..2083492 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| K5684_RS10160 () | 2083527..2084225 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| K5684_RS10165 () | 2084249..2084905 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| K5684_RS10170 () | 2085013..2085243 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| K5684_RS10175 () | 2085381..2085755 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| K5684_RS10180 () | 2085756..2086631 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| K5684_RS10185 () | 2086648..2087001 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2087101..2087246 | - | 146 | - | - | Antitoxin Detail |
| - | 2087141..2087244 | + | 104 | - | - | Toxin Detail |
| K5684_RS10190 () | 2087375..2088298 | - | 924 | Protein_2004 | hypothetical protein ; Integrase | Integrase |
| K5684_RS25225 () | 2088562..2089023 | - | 462 | Protein_2005 | DNA breaking-rejoining protein | - |
| K5684_RS10200 () | 2089012..2089203 | + | 192 | Protein_2006 | glycoside hydrolase family 19 protein | - |
| K5684_RS10205 () | 2089257..2089790 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| K5684_RS10210 () | 2090047..2090214 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| K5684_RS10215 () | 2090279..2090467 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| K5684_RS10220 () | 2090522..2090782 | + | 261 | Protein_2010 | DUF1441 family protein | - |
| K5684_RS10225 () | 2090997..2091341 | + | 345 | Protein_2011 | macro domain-containing protein | - |
| K5684_RS10230 () | 2091351..2091821 | + | 471 | Protein_2012 | tail fiber assembly protein | - |
| K5684_RS10235 () | 2091918..2092118 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| K5684_RS25230 () | 2092508..2092688 | - | 181 | Protein_2014 | IS3 family transposase | - |
| K5684_RS10240 () | 2092679..2092780 | + | 102 | Protein_2015 | arsenic transporter | - |
| K5684_RS25235 () | 2093402..2093634 | + | 233 | Protein_2016 | helix-turn-helix domain-containing protein | - |
| K5684_RS10250 () | 2093961..2094575 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| K5684_RS10255 () | 2094585..2094743 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| K5684_RS10260 () | 2094876..2095790 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| K5684_RS10265 () | 2097103..2097525 | - | 423 | Protein_2020 | hypothetical protein ; Integrase | Integrase |
| K5684_RS10270 () | 2097595..2098789 | + | 1195 | Protein_2021 | IS256 family transposase IS285 | Transposase |
| K5684_RS10275 () | 2098935..2099075 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| K5684_RS10280 () | 2099241..2099510 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| K5684_RS10285 () | 2099880..2100299 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| K5684_RS10290 () | 2100687..2101163 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| K5684_RS10295 () | 2101493..2101888 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| K5684_RS10300 () | 2102571..2103293 | + | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| K5684_RS10305 () | 2103578..2103742 | + | 165 | WP_001134856.1 | membrane protein | - |
| K5684_RS10310 () | 2103966..2104616 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| K5684_RS10315 () | 2104635..2104826 | - | 192 | WP_000457836.1 | YebW family protein | - |
| K5684_RS10320 () | 2104937..2105173 | - | 237 | WP_024131108.1 | YebV family protein | - |
| K5684_RS10325 () | 2105291..2106730 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| K5684_RS10330 () | 2106808..2109441 | - | 2634 | WP_001535256.1 | hypothetical protein | VF |
| K5684_RS10335 () | 2109410..2110693 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| K5684_RS10340 () | 2110822..2111319 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| K5684_RS10345 () | 2111417..2112103 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| K5684_RS10350 () | 2112123..2114171 | + | 2049 | WP_033567178.1 | carboxy terminal-processing peptidase | - |
| K5684_RS10355 () | 2114364..2115245 | + | 882 | WP_000984498.1 | protease HtpX | - |
| K5684_RS10360 () | 2115293..2116666 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| K5684_RS10365 () | 2116842..2117633 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| K5684_RS10370 () | 2117845..2118084 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| K5684_RS10375 () | 2118242..2118385 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| K5684_RS10380 () | 2118456..2118743 | + | 288 | WP_001000660.1 | YebO family protein | - |
| K5684_RS10385 () | 2119392..2119535 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| K5684_RS10390 () | 2119548..2119757 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| K5684_RS10395 () | 2119977..2121722 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| K5684_RS10400 () | 2121788..2122597 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| K5684_RS10405 () | 2122594..2123160 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| K5684_RS10410 () | 2123570..2124028 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26047 | NC_016856 | 1954607..1985261 | 0.005 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0 |