MGE detailed information
MGE type: Prophage MGE length: 28001 bp
Accession: NZ_CP091547 Location: 2610379..2638379 Organism: Salmonella enterica strain 1559 Replicon: chromosome
Accession: NZ_CP091547 Location: 2610379..2638379 Organism: Salmonella enterica strain 1559 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L4413_RS12845 () | 2605649..2607697 | - | 2049 | WP_033567178.1 | carboxy terminal-processing peptidase | - |
| L4413_RS12850 () | 2607717..2608403 | - | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| L4413_RS12855 () | 2608501..2608998 | - | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| L4413_RS12860 () | 2609127..2610410 | + | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| L4413_RS12865 () | 2610379..2613012 | + | 2634 | WP_001535256.1 | hypothetical protein | VF |
| L4413_RS12870 () | 2613090..2614529 | + | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| L4413_RS12875 () | 2614647..2614883 | + | 237 | WP_024131108.1 | YebV family protein | - |
| L4413_RS12880 () | 2614994..2615185 | + | 192 | WP_000457836.1 | YebW family protein | - |
| L4413_RS12885 () | 2615204..2615854 | - | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| L4413_RS12890 () | 2616078..2616242 | - | 165 | WP_001134856.1 | membrane protein | - |
| L4413_RS12895 () | 2616527..2617249 | - | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| L4413_RS12900 () | 2617932..2618327 | + | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| L4413_RS12905 () | 2618657..2619133 | + | 477 | WP_000030934.1 | hypothetical protein | - |
| L4413_RS12910 () | 2619521..2619940 | - | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| L4413_RS12915 () | 2620310..2620579 | + | 270 | WP_001752421.1 | hypothetical protein | - |
| L4413_RS12920 () | 2620745..2620885 | + | 141 | WP_001617922.1 | hypothetical protein | - |
| L4413_RS12925 () | 2621031..2622225 | - | 1195 | Protein_2522 | IS256 family transposase IS285 | Transposase |
| L4413_RS12930 () | 2622295..2622717 | + | 423 | Protein_2523 | hypothetical protein ; Integrase | Integrase |
| L4413_RS12935 () | 2624030..2624944 | + | 915 | WP_001233446.1 | DMT family transporter | - |
| L4413_RS12940 () | 2625077..2625235 | + | 159 | WP_000480735.1 | DUF5993 family protein | - |
| L4413_RS12945 () | 2625245..2625859 | + | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| L4413_RS12950 () | 2626186..2626353 | - | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| L4413_RS12955 () | 2627007..2627132 | - | 126 | WP_000457876.1 | hypothetical protein | - |
| L4413_RS12960 () | 2627132..2627312 | + | 181 | Protein_2529 | IS3 family transposase | - |
| L4413_RS12965 () | 2627702..2627902 | + | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| L4413_RS12970 () | 2627999..2628469 | - | 471 | Protein_2531 | tail fiber assembly protein | - |
| L4413_RS12975 () | 2628479..2628823 | - | 345 | Protein_2532 | macro domain-containing protein | - |
| L4413_RS12980 () | 2629038..2629298 | - | 261 | Protein_2533 | DUF1441 family protein | - |
| L4413_RS12985 () | 2629353..2629541 | + | 189 | WP_001521334.1 | hypothetical protein | - |
| L4413_RS12990 () | 2629606..2629773 | + | 168 | WP_000789530.1 | lytic enzyme | - |
| L4413_RS12995 () | 2630030..2630563 | - | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| L4413_RS13000 () | 2630617..2630808 | - | 192 | Protein_2537 | glycoside hydrolase family 19 protein | - |
| L4413_RS13005 () | 2630797..2631258 | + | 462 | Protein_2538 | DNA breaking-rejoining protein | - |
| L4413_RS13010 () | 2631522..2632445 | + | 924 | Protein_2539 | hypothetical protein ; Integrase | Integrase |
| - | 2632574..2632719 | + | 146 | - | - | Antitoxin Detail |
| - | 2632576..2632679 | - | 104 | - | - | Toxin Detail |
| L4413_RS13015 () | 2632819..2633172 | - | 354 | WP_000722368.1 | YebY family protein | - |
| L4413_RS13020 () | 2633189..2634064 | - | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| L4413_RS13025 () | 2634065..2634439 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| L4413_RS13030 () | 2634577..2634807 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| L4413_RS13035 () | 2634915..2635571 | + | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| L4413_RS13040 () | 2635595..2636293 | + | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| L4413_RS13045 () | 2636328..2638379 | - | 2052 | WP_000936999.1 | oligopeptidase B | - |
| L4413_RS13050 () | 2638592..2639251 | - | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| L4413_RS13055 () | 2639345..2639698 | - | 354 | WP_001042119.1 | protein YebF | - |
| L4413_RS13060 () | 2639766..2640056 | - | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| L4413_RS13065 () | 2640187..2641365 | + | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| L4413_RS13070 () | 2641465..2642106 | - | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0.008 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26047 | NC_016856 | 1954607..1985261 | 0.003 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0.008 |