MGE detailed information
MGE type: Prophage MGE length: 38325 bp
Accession: NZ_CP069381 Location: 1995955..2034279 Organism: Salmonella enterica strain GSJ/2016-Sal-016 Replicon: chromosome
Accession: NZ_CP069381 Location: 1995955..2034279 Organism: Salmonella enterica strain GSJ/2016-Sal-016 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JSR10_RS09590 () | 1992228..1992869 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| JSR10_RS09595 () | 1992969..1994147 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| JSR10_RS09600 () | 1994278..1994568 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| JSR10_RS09605 () | 1994636..1994989 | + | 354 | WP_001042119.1 | protein YebF | - |
| JSR10_RS09610 () | 1995083..1995742 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| JSR10_RS09615 () | 1995955..1998006 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| JSR10_RS09620 () | 1998041..1998739 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| JSR10_RS09625 () | 1998763..1999419 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| JSR10_RS09630 () | 1999527..1999757 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| JSR10_RS09635 () | 1999895..2000269 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| JSR10_RS09640 () | 2000270..2001145 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| JSR10_RS09645 () | 2001162..2001515 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2001615..2001760 | - | 146 | - | - | Antitoxin Detail |
| - | 2001655..2001758 | + | 104 | - | - | Toxin Detail |
| JSR10_RS09650 () | 2001889..2002812 | - | 924 | Protein_1887 | hypothetical protein ; Integrase | Integrase |
| JSR10_RS09655 () | 2003076..2003537 | - | 462 | Protein_1888 | DNA breaking-rejoining protein | - |
| JSR10_RS09660 () | 2003526..2003717 | + | 192 | Protein_1889 | glycoside hydrolase family 19 protein | - |
| JSR10_RS09665 () | 2003771..2004304 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| JSR10_RS09670 () | 2004561..2004728 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| JSR10_RS09675 () | 2004793..2004981 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| JSR10_RS09680 () | 2005036..2005296 | + | 261 | Protein_1893 | DUF1441 family protein | - |
| JSR10_RS09685 () | 2005298..2005513 | + | 216 | Protein_1894 | shikimate transporter | - |
| JSR10_RS09690 () | 2005511..2005855 | + | 345 | Protein_1895 | macro domain-containing protein | - |
| JSR10_RS09695 () | 2005865..2006335 | + | 471 | Protein_1896 | tail fiber assembly protein | - |
| JSR10_RS09700 () | 2006432..2006632 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| JSR10_RS09705 () | 2007022..2007202 | - | 181 | Protein_1898 | IS3 family transposase | - |
| JSR10_RS09710 () | 2007202..2007327 | + | 126 | WP_000457876.1 | hypothetical protein | - |
| JSR10_RS09715 () | 2007981..2008148 | + | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| JSR10_RS09720 () | 2008475..2009089 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| JSR10_RS09725 () | 2009099..2009257 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| JSR10_RS09730 () | 2009390..2010304 | - | 915 | WP_001233445.1 | DMT family transporter | - |
| JSR10_RS09735 () | 2011607..2012029 | - | 423 | Protein_1904 | hypothetical protein ; Integrase | Integrase |
| JSR10_RS09740 () | 2012099..2013307 | + | 1209 | WP_000343625.1 | IS256 family transposase ISEc39 | Transposase |
| JSR10_RS09745 () | 2013453..2013593 | - | 141 | WP_001576018.1 | hypothetical protein | - |
| JSR10_RS09750 () | 2013759..2014028 | - | 270 | WP_012664556.1 | hypothetical protein | - |
| JSR10_RS09755 () | 2014401..2014820 | + | 420 | WP_000354407.1 | GNAT family N-acetyltransferase | - |
| JSR10_RS09760 () | 2015208..2015684 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| JSR10_RS09765 () | 2016013..2016408 | - | 396 | WP_000422880.1 | DUF1398 domain-containing protein | - |
| JSR10_RS09770 () | 2017092..2017814 | + | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| JSR10_RS09775 () | 2018099..2018263 | + | 165 | WP_001134856.1 | membrane protein | - |
| JSR10_RS09780 () | 2018487..2019137 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| JSR10_RS09785 () | 2019156..2019347 | - | 192 | WP_000457836.1 | YebW family protein | - |
| JSR10_RS09790 () | 2019458..2019694 | - | 237 | WP_024131108.1 | YebV family protein | - |
| JSR10_RS09795 () | 2019812..2021251 | - | 1440 | WP_023181135.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JSR10_RS09800 () | 2021329..2023962 | - | 2634 | WP_001521100.1 | hypothetical protein | VF |
| JSR10_RS09805 () | 2023931..2025214 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| JSR10_RS09810 () | 2025343..2025840 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| JSR10_RS09815 () | 2025938..2026624 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| JSR10_RS09820 () | 2026644..2028692 | + | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| JSR10_RS09825 () | 2028886..2029767 | + | 882 | WP_000984498.1 | protease HtpX | - |
| JSR10_RS09830 () | 2029815..2031188 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| JSR10_RS09835 () | 2031364..2032155 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| JSR10_RS09840 () | 2032367..2032606 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| JSR10_RS09845 () | 2032764..2032907 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| JSR10_RS09850 () | 2032978..2033265 | + | 288 | WP_001000660.1 | YebO family protein | - |
| JSR10_RS09855 () | 2033914..2034057 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| JSR10_RS09860 () | 2034070..2034279 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| JSR10_RS09865 () | 2034499..2036244 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| JSR10_RS09870 () | 2036310..2037119 | + | 810 | WP_000010930.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| JSR10_RS09875 () | 2037116..2037682 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| JSR10_RS09880 () | 2038092..2038550 | - | 459 | WP_000156274.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26047 | NC_016856 | 1954607..1985261 | 0.01 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0.004 |