MGE detailed information
MGE type: Prophage MGE length: 38317 bp
Accession: NZ_AP023294 Location: 2081358..2119674 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4261 Replicon: chromosome
Accession: NZ_AP023294 Location: 2081358..2119674 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4261 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5635_RS10120 () | 2077631..2078272 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| K5635_RS10125 () | 2078372..2079550 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| K5635_RS10130 () | 2079681..2079971 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| K5635_RS10135 () | 2080039..2080392 | + | 354 | WP_001042119.1 | protein YebF | - |
| K5635_RS10140 () | 2080486..2081145 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| K5635_RS10145 () | 2081358..2083409 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| K5635_RS10150 () | 2083444..2084142 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| K5635_RS10155 () | 2084166..2084822 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| K5635_RS10160 () | 2084930..2085160 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| K5635_RS10165 () | 2085298..2085672 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| K5635_RS10170 () | 2085673..2086548 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| K5635_RS10175 () | 2086565..2086918 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2087018..2087163 | - | 146 | - | - | Antitoxin Detail |
| - | 2087058..2087161 | + | 104 | - | - | Toxin Detail |
| K5635_RS10180 () | 2087292..2088215 | - | 924 | Protein_2001 | hypothetical protein ; Integrase | Integrase |
| K5635_RS24395 () | 2088479..2088940 | - | 462 | Protein_2002 | DNA breaking-rejoining protein | - |
| K5635_RS10190 () | 2088929..2089120 | + | 192 | Protein_2003 | glycoside hydrolase family 19 protein | - |
| K5635_RS10195 () | 2089174..2089707 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| K5635_RS10200 () | 2089964..2090131 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| K5635_RS10205 () | 2090196..2090384 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| K5635_RS10210 () | 2090439..2090699 | + | 261 | Protein_2007 | DUF1441 family protein | - |
| K5635_RS10215 () | 2090914..2091258 | + | 345 | Protein_2008 | macro domain-containing protein | - |
| K5635_RS10220 () | 2091268..2091738 | + | 471 | Protein_2009 | tail fiber assembly protein | - |
| K5635_RS10225 () | 2091835..2092035 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| K5635_RS24400 () | 2092425..2092605 | - | 181 | Protein_2011 | IS3 family transposase | - |
| K5635_RS10230 () | 2092596..2092697 | + | 102 | Protein_2012 | arsenic transporter | - |
| K5635_RS24405 () | 2093319..2093551 | + | 233 | Protein_2013 | helix-turn-helix domain-containing protein | - |
| K5635_RS10245 () | 2093878..2094492 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| K5635_RS10250 () | 2094502..2094660 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| K5635_RS10255 () | 2094793..2095707 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| K5635_RS10260 () | 2097020..2097442 | - | 423 | Protein_2017 | hypothetical protein ; Integrase | Integrase |
| K5635_RS10265 () | 2097512..2098706 | + | 1195 | Protein_2018 | IS256 family transposase IS285 | Transposase |
| K5635_RS10270 () | 2098852..2098992 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| K5635_RS10275 () | 2099158..2099427 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| K5635_RS10280 () | 2099797..2100216 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| K5635_RS10285 () | 2100604..2101080 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| K5635_RS10290 () | 2101410..2101805 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| K5635_RS10295 () | 2102488..2103210 | + | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| K5635_RS10300 () | 2103495..2103659 | + | 165 | WP_001134856.1 | membrane protein | - |
| K5635_RS10305 () | 2103883..2104533 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| K5635_RS10310 () | 2104552..2104743 | - | 192 | WP_000457836.1 | YebW family protein | - |
| K5635_RS10315 () | 2104854..2105090 | - | 237 | WP_024131108.1 | YebV family protein | - |
| K5635_RS10320 () | 2105208..2106647 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| K5635_RS10325 () | 2106725..2109358 | - | 2634 | WP_001535256.1 | hypothetical protein | VF |
| K5635_RS10330 () | 2109327..2110610 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| K5635_RS10335 () | 2110739..2111236 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| K5635_RS10340 () | 2111334..2112020 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| K5635_RS10345 () | 2112040..2114088 | + | 2049 | WP_033567178.1 | carboxy terminal-processing peptidase | - |
| K5635_RS10350 () | 2114281..2115162 | + | 882 | WP_000984498.1 | protease HtpX | - |
| K5635_RS10355 () | 2115210..2116583 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| K5635_RS10360 () | 2116759..2117550 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| K5635_RS10365 () | 2117762..2118001 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| K5635_RS10370 () | 2118159..2118302 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| K5635_RS10375 () | 2118373..2118660 | + | 288 | WP_001000660.1 | YebO family protein | - |
| K5635_RS10380 () | 2119309..2119452 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| K5635_RS10385 () | 2119465..2119674 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| K5635_RS10390 () | 2119894..2121639 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| K5635_RS10395 () | 2121705..2122514 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| K5635_RS10400 () | 2122511..2123077 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| K5635_RS10405 () | 2123487..2123945 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26047 | NC_016856 | 1954607..1985261 | 0.005 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0 |