MGE detailed information
MGE type: Prophage MGE length: 38318 bp
Accession: NZ_CP117370 Location: 2122739..2161056 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain RM054 Replicon: chromosome
Accession: NZ_CP117370 Location: 2122739..2161056 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain RM054 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQP97_RS10415 () | 2119012..2119653 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| PQP97_RS10420 () | 2119753..2120931 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PQP97_RS10425 () | 2121062..2121352 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| PQP97_RS10430 () | 2121420..2121773 | + | 354 | WP_001042119.1 | protein YebF | - |
| PQP97_RS10435 () | 2121867..2122526 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| PQP97_RS10440 () | 2122739..2124790 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| PQP97_RS10445 () | 2124825..2125523 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| PQP97_RS10450 () | 2125547..2126203 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| PQP97_RS10455 () | 2126311..2126541 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PQP97_RS10460 () | 2126679..2127053 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| PQP97_RS10465 () | 2127054..2127929 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| PQP97_RS10470 () | 2127946..2128299 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2128399..2128544 | - | 146 | - | - | Antitoxin Detail |
| - | 2128439..2128542 | + | 104 | - | - | Toxin Detail |
| PQP97_RS10475 () | 2128673..2129596 | - | 924 | Protein_2049 | hypothetical protein ; Integrase | Integrase |
| PQP97_RS10480 () | 2129860..2130321 | - | 462 | Protein_2050 | DNA breaking-rejoining protein | - |
| PQP97_RS10485 () | 2130310..2130501 | + | 192 | Protein_2051 | glycoside hydrolase family 19 protein | - |
| PQP97_RS10490 () | 2130555..2131088 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| PQP97_RS10495 () | 2131345..2131512 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| PQP97_RS10500 () | 2131577..2131765 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| PQP97_RS10505 () | 2131820..2132080 | + | 261 | Protein_2055 | DUF1441 family protein | - |
| PQP97_RS10510 () | 2132295..2132639 | + | 345 | Protein_2056 | macro domain-containing protein | - |
| PQP97_RS10515 () | 2132649..2133119 | + | 471 | Protein_2057 | tail fiber assembly protein | - |
| PQP97_RS10520 () | 2133216..2133416 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| PQP97_RS10525 () | 2133806..2133986 | - | 181 | Protein_2059 | IS3 family transposase | - |
| PQP97_RS10530 () | 2133986..2134111 | + | 126 | WP_000457876.1 | hypothetical protein | - |
| PQP97_RS10535 () | 2134625..2134771 | - | 147 | WP_001520350.1 | hypothetical protein | - |
| PQP97_RS10540 () | 2134765..2134932 | + | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| PQP97_RS10545 () | 2135259..2135873 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| PQP97_RS10550 () | 2135883..2136041 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| PQP97_RS10555 () | 2136174..2137088 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| PQP97_RS10560 () | 2138401..2138823 | - | 423 | Protein_2066 | hypothetical protein ; Integrase | Integrase |
| PQP97_RS10565 () | 2138893..2140087 | + | 1195 | Protein_2067 | IS256 family transposase IS285 | Transposase |
| PQP97_RS10570 () | 2140233..2140373 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| PQP97_RS10575 () | 2140539..2140808 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| PQP97_RS10580 () | 2141178..2141597 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| PQP97_RS10585 () | 2141985..2142461 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| PQP97_RS10590 () | 2142791..2143186 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| PQP97_RS10595 () | 2143869..2144591 | + | 723 | WP_000182072.1 | hypothetical protein | VF |
| PQP97_RS10600 () | 2144876..2145040 | + | 165 | WP_001134856.1 | membrane protein | - |
| PQP97_RS10605 () | 2145264..2145914 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| PQP97_RS10610 () | 2145933..2146124 | - | 192 | WP_000457836.1 | YebW family protein | - |
| PQP97_RS10615 () | 2146235..2146471 | - | 237 | WP_024131108.1 | YebV family protein | - |
| PQP97_RS10620 () | 2146589..2148028 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PQP97_RS10625 () | 2148106..2150739 | - | 2634 | WP_001535256.1 | hypothetical protein | VF |
| PQP97_RS10630 () | 2150708..2151991 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| PQP97_RS10635 () | 2152120..2152617 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| PQP97_RS10640 () | 2152715..2153401 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| PQP97_RS10645 () | 2153421..2155469 | + | 2049 | WP_033567178.1 | carboxy terminal-processing peptidase | - |
| PQP97_RS10650 () | 2155663..2156544 | + | 882 | WP_000984498.1 | protease HtpX | - |
| PQP97_RS10655 () | 2156592..2157965 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| PQP97_RS10660 () | 2158141..2158932 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| PQP97_RS10665 () | 2159144..2159383 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| PQP97_RS10670 () | 2159541..2159684 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| PQP97_RS10675 () | 2159755..2160042 | + | 288 | WP_001000660.1 | YebO family protein | - |
| PQP97_RS10680 () | 2160691..2160834 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| PQP97_RS10685 () | 2160847..2161056 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| PQP97_RS10690 () | 2161276..2163021 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| PQP97_RS10695 () | 2163087..2163896 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| PQP97_RS10700 () | 2163893..2164459 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| PQP97_RS10705 () | 2164869..2165327 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26047 | NC_016856 | 1954607..1985261 | 0.005 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0 |