MGE detailed information
MGE type: Prophage MGE length: 38902 bp
Accession: NZ_CP082929 Location: 1973385..2012286 Organism: Salmonella enterica subsp. enterica serovar London isolate N18-04674 Replicon: chromosome
Accession: NZ_CP082929 Location: 1973385..2012286 Organism: Salmonella enterica subsp. enterica serovar London isolate N18-04674 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6991_RS09435 () | 1969658..1970299 | + | 642 | WP_000800495.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| K6991_RS09440 () | 1970399..1971577 | - | 1179 | WP_058805752.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| K6991_RS09445 () | 1971708..1971998 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| K6991_RS09450 () | 1972066..1972419 | + | 354 | WP_001042123.1 | protein YebF | - |
| K6991_RS09455 () | 1972513..1973172 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| K6991_RS09460 () | 1973385..1975436 | + | 2052 | WP_000936990.1 | oligopeptidase B | - |
| K6991_RS09465 () | 1975473..1976171 | - | 699 | WP_023255939.1 | exodeoxyribonuclease X | - |
| K6991_RS09470 () | 1976195..1976851 | - | 657 | WP_023245437.1 | carbon-nitrogen hydrolase family protein | - |
| K6991_RS09475 () | 1976959..1977189 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| K6991_RS09480 () | 1977327..1977701 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| K6991_RS09485 () | 1977702..1978577 | + | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| K6991_RS09490 () | 1978594..1978947 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 1979049..1979192 | - | 144 | - | - | Antitoxin Detail |
| - | 1979088..1979190 | + | 103 | - | - | Toxin Detail |
| K6991_RS09495 () | 1979330..1980409 | - | 1080 | WP_058107134.1 | hypothetical protein ; Integrase | Integrase |
| K6991_RS09500 () | 1980442..1981593 | - | 1152 | Protein_1855 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| K6991_RS09505 () | 1981582..1981773 | + | 192 | Protein_1856 | glycoside hydrolase family 19 protein | - |
| K6991_RS09510 () | 1981827..1982360 | + | 534 | WP_023256014.1 | DUF2514 domain-containing protein | - |
| K6991_RS09515 () | 1982617..1982784 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| K6991_RS09520 () | 1982849..1983037 | - | 189 | WP_001034748.1 | hypothetical protein | - |
| K6991_RS09525 () | 1983092..1983352 | + | 261 | Protein_1860 | DUF1441 family protein | - |
| K6991_RS09530 () | 1983354..1983569 | + | 216 | Protein_1861 | shikimate transporter | - |
| K6991_RS09535 () | 1983579..1983866 | + | 288 | Protein_1862 | macro domain-containing protein | - |
| K6991_RS09540 () | 1983879..1984390 | + | 512 | Protein_1863 | tail fiber assembly protein | - |
| K6991_RS09545 () | 1984487..1984687 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| K6991_RS09550 () | 1985077..1985257 | - | 181 | Protein_1865 | IS3 family transposase | - |
| K6991_RS09555 () | 1985248..1985349 | + | 102 | Protein_1866 | arsenic transporter | - |
| K6991_RS09560 () | 1985971..1986203 | + | 233 | Protein_1867 | helix-turn-helix domain-containing protein | - |
| K6991_RS09565 () | 1986530..1987144 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| K6991_RS09570 () | 1987154..1987312 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| K6991_RS09575 () | 1987445..1988359 | - | 915 | WP_001233445.1 | DMT family transporter | - |
| K6991_RS09580 () | 1989645..1990067 | - | 423 | Protein_1871 | hypothetical protein ; Integrase | Integrase |
| K6991_RS09585 () | 1990137..1991331 | + | 1195 | Protein_1872 | IS256 family transposase IS285 | Transposase |
| K6991_RS09590 () | 1991477..1991617 | - | 141 | WP_038390064.1 | hypothetical protein | - |
| K6991_RS09595 () | 1991783..1992052 | - | 270 | WP_077914367.1 | hypothetical protein | - |
| K6991_RS09600 () | 1992423..1992842 | + | 420 | WP_000354407.1 | GNAT family N-acetyltransferase | - |
| K6991_RS09605 () | 1993215..1993691 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| K6991_RS09610 () | 1994021..1994416 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| K6991_RS09615 () | 1995100..1995822 | + | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| K6991_RS09620 () | 1996107..1996271 | + | 165 | WP_001134856.1 | membrane protein | - |
| K6991_RS09625 () | 1996495..1997145 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| K6991_RS09630 () | 1997164..1997355 | - | 192 | WP_000457836.1 | YebW family protein | - |
| K6991_RS09635 () | 1997466..1997702 | - | 237 | WP_024131108.1 | YebV family protein | - |
| K6991_RS09640 () | 1997820..1999259 | - | 1440 | WP_001531515.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| K6991_RS09645 () | 1999337..2001970 | - | 2634 | WP_001521100.1 | hypothetical protein | VF |
| K6991_RS09650 () | 2001939..2003222 | - | 1284 | WP_001207293.1 | membrane integrity lipid transport subunit YebS | - |
| K6991_RS09655 () | 2003351..2003848 | + | 498 | WP_058805750.1 | GAF domain-containing protein | - |
| K6991_RS09660 () | 2003946..2004632 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| K6991_RS09665 () | 2004652..2006700 | + | 2049 | WP_001091234.1 | carboxy terminal-processing peptidase | - |
| K6991_RS09670 () | 2006893..2007774 | + | 882 | WP_000984498.1 | protease HtpX | - |
| K6991_RS09675 () | 2007822..2009195 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| K6991_RS09680 () | 2009371..2010162 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| K6991_RS09685 () | 2010374..2010613 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| K6991_RS09690 () | 2010771..2010914 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| K6991_RS09695 () | 2010985..2011272 | + | 288 | WP_001000660.1 | YebO family protein | - |
| K6991_RS09700 () | 2011921..2012064 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| K6991_RS09705 () | 2012077..2012286 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| K6991_RS09710 () | 2012506..2014251 | + | 1746 | WP_000730326.1 | peptidoglycan glycosyltransferase FtsI | - |
| K6991_RS09715 () | 2014317..2015126 | + | 810 | WP_000010924.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| K6991_RS09720 () | 2015123..2015689 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| K6991_RS09725 () | 2016099..2016557 | - | 459 | WP_000156274.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0.007 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0.007 |