Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1979049..1979192 | Replicon | chromosome |
| Accession | NZ_CP082929 | ||
| Organism | Salmonella enterica subsp. enterica serovar London isolate N18-04674 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1979088..1979190 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1979049..1979192 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6991_RS09465 | 1975473..1976171 | - | 699 | WP_023255939.1 | exodeoxyribonuclease X | - |
| K6991_RS09470 | 1976195..1976851 | - | 657 | WP_023245437.1 | carbon-nitrogen hydrolase family protein | - |
| K6991_RS09475 | 1976959..1977189 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| K6991_RS09480 | 1977327..1977701 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| K6991_RS09485 | 1977702..1978577 | + | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| K6991_RS09490 | 1978594..1978947 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 1979049..1979192 | - | 144 | - | - | Antitoxin |
| - | 1979088..1979190 | + | 103 | - | - | Toxin |
| K6991_RS09495 | 1979330..1980409 | - | 1080 | WP_058107134.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| K6991_RS09500 | 1980442..1981593 | - | 1152 | Protein_1855 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| K6991_RS09505 | 1981582..1981773 | + | 192 | Protein_1856 | glycoside hydrolase family 19 protein | - |
| K6991_RS09510 | 1981827..1982360 | + | 534 | WP_023256014.1 | DUF2514 domain-containing protein | - |
| K6991_RS09515 | 1982617..1982784 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| K6991_RS09520 | 1982849..1983037 | - | 189 | WP_001034748.1 | hypothetical protein | - |
| K6991_RS09525 | 1983092..1983352 | + | 261 | Protein_1860 | DUF1441 family protein | - |
| K6991_RS09530 | 1983354..1983569 | + | 216 | Protein_1861 | shikimate transporter | - |
| K6991_RS09535 | 1983579..1983866 | + | 288 | Protein_1862 | macro domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| inside | Prophage | - | sopE2 | 1973385..2012286 | 38901 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T215634 NZ_CP082929:1979088-1979190 [Salmonella enterica subsp. enterica serovar London]
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT215634 NZ_CP082929:c1979192-1979049 [Salmonella enterica subsp. enterica serovar London]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
