Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1951562..1951707 Replicon
Accession NC_016854
Organism Salmonella enterica serovar Typhimurium

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1951564..1951667 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1951562..1951707 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
- 1951562..1951707 + 146 NuclAT_1 - Antitoxin
- 1951564..1951667 - 104 NuclT_0 - Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Prophage - sopE2 1928777..1959044 30267


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T26033 NC_016854:c1951667-1951564 [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 146 bp

>AT26033 NC_016854:1951562-1951707 [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References