MGE detailed information
MGE type: Prophage MGE length: 54526 bp
Accession: NZ_CP068018 Location: 2602225..2656750 Organism: Salmonella enterica strain 1722 Replicon: chromosome
Accession: NZ_CP068018 Location: 2602225..2656750 Organism: Salmonella enterica strain 1722 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JI996_RS12805 () | 2597954..2598412 | + | 459 | WP_000156280.1 | DUF986 family protein | - |
| JI996_RS12810 () | 2598822..2599388 | + | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| JI996_RS12815 () | 2599385..2600194 | - | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| JI996_RS12820 () | 2600260..2602005 | - | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| JI996_RS12825 () | 2602225..2602434 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| JI996_RS12830 () | 2602447..2602590 | - | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| JI996_RS12835 () | 2603239..2603526 | - | 288 | WP_001000660.1 | YebO family protein | - |
| JI996_RS12840 () | 2603597..2603740 | - | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| JI996_RS12845 () | 2603898..2604137 | + | 240 | WP_001236777.1 | invasion protein YobH | - |
| JI996_RS12850 () | 2604349..2605140 | - | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| JI996_RS12855 () | 2605316..2606689 | + | 1374 | WP_000416128.1 | MFS transporter | - |
| JI996_RS12860 () | 2606737..2607618 | - | 882 | WP_000984498.1 | protease HtpX | - |
| JI996_RS12865 () | 2607812..2609860 | - | 2049 | WP_033567178.1 | carboxy terminal-processing peptidase | - |
| JI996_RS12870 () | 2609880..2610566 | - | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| JI996_RS12875 () | 2610664..2611161 | - | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| JI996_RS12880 () | 2611290..2612573 | + | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| JI996_RS12885 () | 2612542..2615175 | + | 2634 | WP_001535256.1 | hypothetical protein | VF |
| JI996_RS12890 () | 2615253..2616692 | + | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JI996_RS12895 () | 2616810..2617046 | + | 237 | WP_024131108.1 | YebV family protein | - |
| JI996_RS12900 () | 2617157..2617348 | + | 192 | WP_000457836.1 | YebW family protein | - |
| JI996_RS12905 () | 2617367..2618017 | - | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| JI996_RS12910 () | 2618241..2618405 | - | 165 | WP_001134856.1 | membrane protein | - |
| JI996_RS12915 () | 2618690..2619412 | - | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| JI996_RS12920 () | 2620095..2620490 | + | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| JI996_RS12925 () | 2620820..2621296 | + | 477 | WP_000030934.1 | hypothetical protein | - |
| JI996_RS12930 () | 2621684..2622103 | - | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| JI996_RS12935 () | 2622473..2622742 | + | 270 | WP_001752421.1 | hypothetical protein | - |
| JI996_RS12940 () | 2622908..2623048 | + | 141 | WP_001617922.1 | hypothetical protein | - |
| JI996_RS12945 () | 2623194..2624388 | - | 1195 | Protein_2526 | IS256 family transposase IS285 | Transposase |
| JI996_RS12950 () | 2624458..2624880 | + | 423 | Protein_2527 | hypothetical protein ; Integrase | Integrase |
| JI996_RS12955 () | 2626193..2627107 | + | 915 | WP_001233446.1 | DMT family transporter | - |
| JI996_RS12960 () | 2627240..2627398 | + | 159 | WP_000480735.1 | DUF5993 family protein | - |
| JI996_RS12965 () | 2627408..2628022 | + | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| JI996_RS12970 () | 2628349..2628516 | - | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| JI996_RS12975 () | 2629170..2629295 | - | 126 | WP_000457876.1 | hypothetical protein | - |
| JI996_RS12980 () | 2629295..2629475 | + | 181 | Protein_2533 | IS3 family transposase | - |
| JI996_RS12985 () | 2629865..2630065 | + | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| JI996_RS12990 () | 2630162..2630632 | - | 471 | Protein_2535 | tail fiber assembly protein | - |
| JI996_RS12995 () | 2630642..2630986 | - | 345 | Protein_2536 | macro domain-containing protein | - |
| JI996_RS13000 () | 2631201..2631461 | - | 261 | Protein_2537 | DUF1441 family protein | - |
| JI996_RS13005 () | 2631516..2631704 | + | 189 | WP_001521334.1 | hypothetical protein | - |
| JI996_RS13010 () | 2631769..2631936 | + | 168 | WP_000789530.1 | lytic enzyme | - |
| JI996_RS13015 () | 2632193..2632726 | - | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| JI996_RS13020 () | 2632780..2632971 | - | 192 | Protein_2541 | glycoside hydrolase family 19 protein | - |
| JI996_RS13025 () | 2632960..2633421 | + | 462 | Protein_2542 | DNA breaking-rejoining protein | - |
| JI996_RS13030 () | 2633685..2634608 | + | 924 | Protein_2543 | hypothetical protein ; Integrase | Integrase |
| - | 2634737..2634882 | + | 146 | - | - | Antitoxin Detail |
| - | 2634739..2634842 | - | 104 | - | - | Toxin Detail |
| JI996_RS13035 () | 2634982..2635335 | - | 354 | WP_000722368.1 | YebY family protein | - |
| JI996_RS13040 () | 2635352..2636227 | - | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| JI996_RS13045 () | 2636228..2636602 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| JI996_RS13050 () | 2636740..2636970 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| JI996_RS13055 () | 2637078..2637734 | + | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| JI996_RS13060 () | 2637758..2638456 | + | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| JI996_RS13065 () | 2638491..2640542 | - | 2052 | WP_000936999.1 | oligopeptidase B | - |
| JI996_RS13070 () | 2640755..2641414 | - | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| JI996_RS13075 () | 2641508..2641861 | - | 354 | WP_001042119.1 | protein YebF | - |
| JI996_RS13080 () | 2641929..2642219 | - | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| JI996_RS13085 () | 2642350..2643528 | + | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| JI996_RS13090 () | 2643628..2644269 | - | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| JI996_RS13095 () | 2644307..2646118 | - | 1812 | WP_001069113.1 | phosphogluconate dehydratase | - |
| JI996_RS13100 () | 2646353..2647828 | - | 1476 | WP_000301711.1 | glucose-6-phosphate dehydrogenase | - |
| JI996_RS13105 () | 2648170..2649039 | + | 870 | WP_001056720.1 | MurR/RpiR family transcriptional regulator | - |
| JI996_RS13110 () | 2649163..2650605 | + | 1443 | WP_000091156.1 | pyruvate kinase | - |
| JI996_RS13115 () | 2650678..2651649 | - | 972 | WP_000448401.1 | Lipid A biosynthesis myristoyltransferase | VF |
| JI996_RS13120 () | 2651766..2653085 | - | 1320 | WP_001184028.1 | murein DD-endopeptidase MepM | - |
| JI996_RS13125 () | 2653101..2654045 | - | 945 | WP_000939597.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| JI996_RS13130 () | 2654124..2654879 | + | 756 | WP_000203014.1 | Zinc import ATP-binding protein ZnuC | VF |
| JI996_RS13135 () | 2654876..2655661 | + | 786 | WP_000571508.1 | High-affinity zinc uptake system membrane protein ZnuB | VF |
| JI996_RS13140 () | 2655740..2656750 | - | 1011 | WP_000568508.1 | Holliday junction ATP-dependent DNA helicase RuvB | VF |
| JI996_RS13145 () | 2656759..2657370 | - | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| JI996_RS13150 () | 2657790..2658686 | + | 897 | WP_010989032.1 | DUF4034 domain-containing protein | - |
| JI996_RS13155 () | 2659313..2659912 | + | 600 | WP_000716748.1 | YebB family permuted papain-like enzyme | - |
| JI996_RS13160 () | 2659914..2660435 | - | 522 | WP_000022509.1 | crossover junction endodeoxyribonuclease RuvC | - |
| JI996_RS13165 () | 2660472..2661212 | - | 741 | WP_000907242.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| JI996_RS13170 () | 2661242..2661694 | - | 453 | WP_000653693.1 | dihydroneopterin triphosphate diphosphatase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0.009 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0.009 |