MGE detailed information
MGE type: Prophage MGE length: 38310 bp
Accession: NZ_CP074094 Location: 1935698..1974007 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain A_cip Replicon: chromosome
Accession: NZ_CP074094 Location: 1935698..1974007 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain A_cip Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFU99_RS09405 () | 1931426..1931884 | + | 459 | WP_000156280.1 | DUF986 family protein | - |
| KFU99_RS09410 () | 1932295..1932861 | + | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| KFU99_RS09415 () | 1932858..1933667 | - | 810 | WP_023203205.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| KFU99_RS09420 () | 1933733..1935478 | - | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| KFU99_RS09425 () | 1935698..1935907 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| KFU99_RS09430 () | 1935920..1936063 | - | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| KFU99_RS09435 () | 1936712..1936999 | - | 288 | WP_001000660.1 | YebO family protein | - |
| KFU99_RS09440 () | 1937070..1937213 | - | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| KFU99_RS09445 () | 1937371..1937610 | + | 240 | WP_001236778.1 | invasion protein YobH | - |
| KFU99_RS09450 () | 1937822..1938613 | - | 792 | WP_001262196.1 | DNA-binding transcriptional regulator KdgR | - |
| KFU99_RS09455 () | 1938789..1940162 | + | 1374 | WP_000416142.1 | MFS transporter | - |
| KFU99_RS09460 () | 1940210..1941091 | - | 882 | WP_000984498.1 | protease HtpX | - |
| KFU99_RS09465 () | 1941285..1943333 | - | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| KFU99_RS09470 () | 1943353..1944039 | - | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| KFU99_RS09475 () | 1944137..1944634 | - | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| KFU99_RS09480 () | 1944763..1946046 | + | 1284 | WP_001207293.1 | membrane integrity lipid transport subunit YebS | - |
| KFU99_RS09485 () | 1946015..1948648 | + | 2634 | WP_001542507.1 | hypothetical protein | VF |
| KFU99_RS09490 () | 1948726..1950165 | + | 1440 | WP_023223925.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KFU99_RS09495 () | 1950283..1950519 | + | 237 | WP_024131108.1 | YebV family protein | - |
| KFU99_RS09500 () | 1950630..1950821 | + | 192 | WP_000457838.1 | DUF1482 family protein | - |
| KFU99_RS09505 () | 1950840..1951490 | - | 651 | WP_017441967.1 | protein-serine/threonine phosphatase | - |
| KFU99_RS09510 () | 1951714..1951878 | - | 165 | WP_001134856.1 | membrane protein | - |
| KFU99_RS09515 () | 1952163..1952885 | - | 723 | WP_212634611.1 | Guanine nucleotide exchange factor sopE2 | VF |
| KFU99_RS09520 () | 1953569..1953964 | + | 396 | WP_000422887.1 | DUF1398 domain-containing protein | - |
| KFU99_RS09525 () | 1954294..1954770 | + | 477 | WP_212634612.1 | hypothetical protein | - |
| KFU99_RS09530 () | 1955158..1955577 | - | 420 | WP_017441959.1 | GNAT family N-acetyltransferase | - |
| KFU99_RS09535 () | 1955947..1956216 | + | 270 | WP_212634613.1 | hypothetical protein | - |
| KFU99_RS09540 () | 1956382..1956522 | + | 141 | WP_001617922.1 | hypothetical protein | - |
| KFU99_RS09545 () | 1956668..1957862 | - | 1195 | Protein_1874 | IS256 family transposase IS285 | Transposase |
| KFU99_RS09550 () | 1957932..1958354 | + | 423 | Protein_1875 | hypothetical protein ; Integrase | Integrase |
| KFU99_RS09555 () | 1959658..1960572 | + | 915 | WP_001233446.1 | DMT family transporter | - |
| KFU99_RS09560 () | 1960705..1960863 | + | 159 | WP_000480735.1 | DUF5993 family protein | - |
| KFU99_RS09565 () | 1960873..1961487 | + | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| KFU99_RS24090 () | 1961814..1961981 | - | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| KFU99_RS24230 () | 1961975..1962121 | + | 147 | WP_001520350.1 | hypothetical protein | - |
| KFU99_RS09580 () | 1962635..1962760 | - | 126 | WP_000457876.1 | hypothetical protein | - |
| KFU99_RS24095 () | 1962760..1962940 | + | 181 | Protein_1882 | IS3 family transposase | - |
| KFU99_RS09585 () | 1963330..1963530 | + | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| KFU99_RS09590 () | 1963627..1964097 | - | 471 | Protein_1884 | tail fiber assembly protein | - |
| KFU99_RS09595 () | 1964107..1964451 | - | 345 | Protein_1885 | macro domain-containing protein | - |
| KFU99_RS09600 () | 1964666..1964926 | - | 261 | Protein_1886 | DUF1441 family protein | - |
| KFU99_RS09605 () | 1965234..1965401 | + | 168 | WP_000789530.1 | lytic enzyme | - |
| KFU99_RS09610 () | 1965658..1966191 | - | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| KFU99_RS09615 () | 1966245..1966436 | - | 192 | Protein_1889 | glycoside hydrolase family 19 protein | - |
| KFU99_RS24100 () | 1966425..1966886 | + | 462 | Protein_1890 | DNA breaking-rejoining protein | - |
| KFU99_RS09625 () | 1967150..1968073 | + | 924 | Protein_1891 | hypothetical protein ; Integrase | Integrase |
| - | 1968202..1968345 | + | 144 | - | - | Antitoxin Detail |
| - | 1968204..1968307 | - | 104 | - | - | Toxin Detail |
| KFU99_RS09630 () | 1968447..1968800 | - | 354 | WP_000722368.1 | YebY family protein | - |
| KFU99_RS09635 () | 1968817..1969692 | - | 876 | WP_023223935.1 | copper homeostasis membrane protein CopD | - |
| KFU99_RS09640 () | 1969693..1970067 | - | 375 | WP_023205606.1 | CopC domain-containing protein YobA | - |
| KFU99_RS09645 () | 1970205..1970435 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| KFU99_RS09650 () | 1970543..1971199 | + | 657 | WP_000100249.1 | carbon-nitrogen hydrolase family protein | - |
| KFU99_RS09655 () | 1971223..1971921 | + | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| KFU99_RS09660 () | 1971956..1974007 | - | 2052 | WP_000936990.1 | oligopeptidase B | - |
| KFU99_RS09665 () | 1974220..1974879 | - | 660 | WP_000024707.1 | tellurite resistance TerB family protein | - |
| KFU99_RS09670 () | 1974973..1975326 | - | 354 | WP_023223936.1 | protein YebF | - |
| KFU99_RS09675 () | 1975394..1975684 | - | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| KFU99_RS09680 () | 1975815..1976993 | + | 1179 | WP_023223937.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| KFU99_RS09685 () | 1977093..1977734 | - | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0.007 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0.007 |