MGE detailed information
MGE type: Prophage MGE length: 38699 bp
Accession: NZ_CP100702 Location: 1973097..2011795 Organism: Salmonella enterica subsp. enterica serovar Thompson strain R18.0872 Replicon: chromosome
Accession: NZ_CP100702 Location: 1973097..2011795 Organism: Salmonella enterica subsp. enterica serovar Thompson strain R18.0872 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL734_RS09560 () | 1969370..1970011 | + | 642 | WP_000800494.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| NL734_RS09565 () | 1970111..1971289 | - | 1179 | WP_000173419.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| NL734_RS09570 () | 1971420..1971710 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| NL734_RS09575 () | 1971778..1972131 | + | 354 | WP_001042123.1 | protein YebF | - |
| NL734_RS09580 () | 1972225..1972884 | + | 660 | WP_000024707.1 | tellurite resistance TerB family protein | - |
| NL734_RS09585 () | 1973097..1975148 | + | 2052 | WP_000936990.1 | oligopeptidase B | - |
| NL734_RS09590 () | 1975185..1975883 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| NL734_RS09595 () | 1975907..1976563 | - | 657 | WP_000100249.1 | carbon-nitrogen hydrolase family protein | - |
| NL734_RS09600 () | 1976671..1976901 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| NL734_RS09605 () | 1977039..1977413 | + | 375 | WP_022544651.1 | CopC domain-containing protein YobA | - |
| NL734_RS09610 () | 1977414..1978289 | + | 876 | WP_017466156.1 | copper homeostasis membrane protein CopD | - |
| NL734_RS09615 () | 1978306..1978659 | + | 354 | WP_017466155.1 | YebY family protein | - |
| - | 1978759..1978904 | - | 146 | - | - | Antitoxin Detail |
| - | 1978799..1978902 | + | 104 | - | - | Toxin Detail |
| NL734_RS09620 () | 1979042..1980121 | - | 1080 | WP_017466154.1 | hypothetical protein ; Integrase | Integrase |
| NL734_RS09625 () | 1980154..1981305 | - | 1152 | Protein_1876 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| NL734_RS09630 () | 1981294..1981485 | + | 192 | Protein_1877 | glycoside hydrolase family 19 protein | - |
| NL734_RS09635 () | 1981539..1982072 | + | 534 | WP_001050883.1 | DUF2514 domain-containing protein | - |
| NL734_RS09640 () | 1982329..1982496 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| NL734_RS09645 () | 1982804..1983064 | + | 261 | Protein_1880 | DUF1441 family protein | - |
| NL734_RS09650 () | 1983066..1983281 | + | 216 | Protein_1881 | shikimate transporter | - |
| NL734_RS09655 () | 1983279..1983623 | + | 345 | Protein_1882 | macro domain-containing protein | - |
| NL734_RS09660 () | 1983633..1984103 | + | 471 | Protein_1883 | tail fiber assembly protein | - |
| NL734_RS09665 () | 1984200..1984400 | - | 201 | WP_031608121.1 | PagK family vesicle-borne virulence factor | - |
| NL734_RS09670 () | 1984803..1984968 | - | 166 | Protein_1885 | IS3 family transposase | - |
| NL734_RS09675 () | 1984959..1985060 | + | 102 | Protein_1886 | arsenic transporter | - |
| NL734_RS09680 () | 1985682..1985914 | + | 233 | Protein_1887 | helix-turn-helix domain-containing protein | - |
| NL734_RS09685 () | 1986241..1986855 | - | 615 | WP_017466152.1 | disulfide bond formation protein B | - |
| NL734_RS09690 () | 1986865..1987023 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| NL734_RS09695 () | 1987156..1988070 | - | 915 | WP_001233445.1 | DMT family transporter | - |
| NL734_RS09700 () | 1989154..1989576 | - | 423 | Protein_1891 | tyrosine-type recombinase/integrase | - |
| NL734_RS09705 () | 1989646..1990840 | + | 1195 | Protein_1892 | IS256 family transposase IS285 | Transposase |
| NL734_RS09710 () | 1990986..1991126 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| NL734_RS09715 () | 1991292..1991561 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| NL734_RS09720 () | 1991931..1992350 | + | 420 | WP_000354407.1 | GNAT family N-acetyltransferase | - |
| NL734_RS09725 () | 1992723..1993199 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| NL734_RS09730 () | 1993529..1993924 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| NL734_RS09735 () | 1994608..1995330 | + | 723 | WP_000182072.1 | hypothetical protein | VF |
| NL734_RS09740 () | 1995615..1995779 | + | 165 | WP_001134856.1 | membrane protein | - |
| NL734_RS09745 () | 1996003..1996653 | + | 651 | WP_017465643.1 | protein-serine/threonine phosphatase | - |
| NL734_RS09750 () | 1996672..1996863 | - | 192 | WP_000457838.1 | DUF1482 family protein | - |
| NL734_RS09755 () | 1996974..1997210 | - | 237 | WP_024131108.1 | YebV family protein | - |
| NL734_RS09760 () | 1997328..1998767 | - | 1440 | WP_024137249.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NL734_RS09765 () | 1998845..2001478 | - | 2634 | WP_001535256.1 | hypothetical protein | VF |
| NL734_RS09770 () | 2001447..2002730 | - | 1284 | WP_001207293.1 | membrane integrity lipid transport subunit YebS | - |
| NL734_RS09775 () | 2002859..2003356 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| NL734_RS09780 () | 2003454..2004140 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| NL734_RS09785 () | 2004160..2006208 | + | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| NL734_RS09790 () | 2006402..2007283 | + | 882 | WP_000984498.1 | protease HtpX | - |
| NL734_RS09795 () | 2007331..2008704 | - | 1374 | WP_000416139.1 | MFS transporter | - |
| NL734_RS09800 () | 2008880..2009671 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| NL734_RS09805 () | 2009883..2010122 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| NL734_RS09810 () | 2010280..2010423 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| NL734_RS09815 () | 2010494..2010781 | + | 288 | WP_001000660.1 | YebO family protein | - |
| NL734_RS09820 () | 2011430..2011573 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| NL734_RS09825 () | 2011586..2011795 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| NL734_RS09830 () | 2012015..2013760 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| NL734_RS09835 () | 2013826..2014635 | + | 810 | WP_017465645.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| NL734_RS09840 () | 2014632..2015198 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| NL734_RS09845 () | 2015608..2016066 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0.006 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0.006 |