MGE detailed information
MGE type: Prophage MGE length: 54518 bp
Accession: NZ_CP099705 Location: 2081505..2136022 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain 013+ Replicon: chromosome
Accession: NZ_CP099705 Location: 2081505..2136022 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain 013+ Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NG892_RS10175 () | 2076562..2077014 | + | 453 | WP_000653693.1 | dihydroneopterin triphosphate diphosphatase | - |
| NG892_RS10180 () | 2077044..2077784 | + | 741 | WP_000907242.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| NG892_RS10185 () | 2077821..2078342 | + | 522 | WP_000022509.1 | crossover junction endodeoxyribonuclease RuvC | - |
| NG892_RS10190 () | 2078344..2078943 | - | 600 | WP_000716748.1 | YebB family permuted papain-like enzyme | - |
| NG892_RS10195 () | 2079570..2080465 | - | 896 | Protein_1991 | DUF4034 domain-containing protein | - |
| NG892_RS10200 () | 2080885..2081496 | + | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| NG892_RS10205 () | 2081505..2082515 | + | 1011 | WP_000568508.1 | Holliday junction ATP-dependent DNA helicase RuvB | VF |
| NG892_RS10210 () | 2082594..2083379 | - | 786 | WP_080247923.1 | hypothetical protein | VF |
| NG892_RS10215 () | 2083376..2084131 | - | 756 | WP_000203014.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| NG892_RS10220 () | 2084210..2085154 | + | 945 | WP_000939597.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| NG892_RS10225 () | 2085170..2086489 | + | 1320 | WP_001184028.1 | murein DD-endopeptidase MepM | - |
| NG892_RS10230 () | 2086606..2087577 | + | 972 | WP_000448401.1 | Lipid A biosynthesis myristoyltransferase | VF |
| NG892_RS10235 () | 2087650..2089092 | - | 1443 | WP_000091156.1 | pyruvate kinase | - |
| NG892_RS10240 () | 2089216..2090085 | - | 870 | WP_001056720.1 | MurR/RpiR family transcriptional regulator | - |
| NG892_RS10245 () | 2090427..2091902 | + | 1476 | WP_000301711.1 | glucose-6-phosphate dehydrogenase | - |
| NG892_RS10250 () | 2092137..2093948 | + | 1812 | WP_001069113.1 | phosphogluconate dehydratase | - |
| NG892_RS10255 () | 2093986..2094627 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| NG892_RS10260 () | 2094727..2095905 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| NG892_RS10265 () | 2096036..2096326 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| NG892_RS10270 () | 2096394..2096747 | + | 354 | WP_001042119.1 | protein YebF | - |
| NG892_RS10275 () | 2096841..2097500 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| NG892_RS10280 () | 2097713..2099764 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| NG892_RS10285 () | 2099799..2100497 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| NG892_RS10290 () | 2100521..2101177 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| NG892_RS10295 () | 2101285..2101515 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| NG892_RS10300 () | 2101653..2102027 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| NG892_RS10305 () | 2102028..2102903 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| NG892_RS10310 () | 2102920..2103273 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2103373..2103518 | - | 146 | - | - | Antitoxin Detail |
| - | 2103413..2103516 | + | 104 | - | - | Toxin Detail |
| NG892_RS10315 () | 2103647..2104570 | - | 924 | Protein_2015 | hypothetical protein ; Integrase | Integrase |
| NG892_RS10320 () | 2104834..2105295 | - | 462 | Protein_2016 | DNA breaking-rejoining protein | - |
| NG892_RS10325 () | 2105284..2105475 | + | 192 | Protein_2017 | glycoside hydrolase family 19 protein | - |
| NG892_RS10330 () | 2105529..2106062 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| NG892_RS10335 () | 2106319..2106486 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| NG892_RS10340 () | 2106551..2106739 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| NG892_RS10345 () | 2106794..2107054 | + | 261 | Protein_2021 | DUF1441 family protein | - |
| NG892_RS10350 () | 2107269..2107613 | + | 345 | Protein_2022 | macro domain-containing protein | - |
| NG892_RS10355 () | 2107623..2108093 | + | 471 | Protein_2023 | tail fiber assembly protein | - |
| NG892_RS10360 () | 2108190..2108390 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| NG892_RS10365 () | 2108780..2108960 | - | 181 | Protein_2025 | IS3 family transposase | - |
| NG892_RS10370 () | 2108951..2109052 | + | 102 | Protein_2026 | arsenic transporter | - |
| NG892_RS10375 () | 2109674..2109906 | + | 233 | Protein_2027 | helix-turn-helix domain-containing protein | - |
| NG892_RS10380 () | 2110233..2110847 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| NG892_RS10385 () | 2110857..2111015 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| NG892_RS10390 () | 2111148..2112062 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| NG892_RS10395 () | 2113366..2113788 | - | 423 | Protein_2031 | hypothetical protein ; Integrase | Integrase |
| NG892_RS10400 () | 2113858..2115052 | + | 1195 | Protein_2032 | IS256 family transposase IS285 | Transposase |
| NG892_RS10405 () | 2115198..2115338 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| NG892_RS10410 () | 2115504..2115773 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| NG892_RS10415 () | 2116143..2116562 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| NG892_RS10420 () | 2116950..2117426 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| NG892_RS10425 () | 2117756..2118151 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| NG892_RS10430 () | 2118835..2119557 | + | 723 | WP_000182072.1 | hypothetical protein | VF |
| NG892_RS10435 () | 2119842..2120006 | + | 165 | WP_001134856.1 | membrane protein | - |
| NG892_RS10440 () | 2120230..2120880 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| NG892_RS10445 () | 2120899..2121090 | - | 192 | WP_000457836.1 | YebW family protein | - |
| NG892_RS10450 () | 2121201..2121437 | - | 237 | WP_024131108.1 | YebV family protein | - |
| NG892_RS10455 () | 2121555..2122994 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NG892_RS10460 () | 2123072..2125705 | - | 2634 | WP_001535256.1 | hypothetical protein | VF |
| NG892_RS10465 () | 2125674..2126957 | - | 1284 | WP_080247963.1 | membrane integrity lipid transport subunit YebS | - |
| NG892_RS10470 () | 2127086..2127583 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| NG892_RS10475 () | 2127681..2128367 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| NG892_RS10480 () | 2128387..2130435 | + | 2049 | WP_080247962.1 | carboxy terminal-processing peptidase | - |
| NG892_RS10485 () | 2130629..2131510 | + | 882 | WP_000984498.1 | protease HtpX | - |
| NG892_RS10490 () | 2131558..2132931 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| NG892_RS10495 () | 2133107..2133898 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| NG892_RS10500 () | 2134110..2134349 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| NG892_RS10505 () | 2134507..2134650 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| NG892_RS10510 () | 2134721..2135008 | + | 288 | WP_001000660.1 | YebO family protein | - |
| NG892_RS10515 () | 2135657..2135800 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| NG892_RS10520 () | 2135813..2136022 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| NG892_RS10525 () | 2136242..2137987 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| NG892_RS10530 () | 2138053..2138862 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| NG892_RS10535 () | 2138859..2139425 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| NG892_RS10540 () | 2139835..2140293 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0.01 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0.01 |