MGE detailed information
MGE type: Prophage MGE length: 54517 bp
Accession: NZ_CP117338 Location: 2022987..2077503 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain RM095 Replicon: chromosome
Accession: NZ_CP117338 Location: 2022987..2077503 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain RM095 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQP94_RS09710 () | 2018043..2018495 | + | 453 | WP_000653693.1 | dihydroneopterin triphosphate diphosphatase | - |
| PQP94_RS09715 () | 2018525..2019265 | + | 741 | WP_000907242.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| PQP94_RS09720 () | 2019302..2019823 | + | 522 | WP_000022509.1 | crossover junction endodeoxyribonuclease RuvC | - |
| PQP94_RS09725 () | 2019825..2020424 | - | 600 | WP_000716748.1 | YebB family permuted papain-like enzyme | - |
| PQP94_RS09730 () | 2021051..2021947 | - | 897 | WP_010989032.1 | DUF4034 domain-containing protein | - |
| PQP94_RS09735 () | 2022367..2022978 | + | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| PQP94_RS09740 () | 2022987..2023997 | + | 1011 | WP_000568508.1 | lipid kinase YegS | VF |
| PQP94_RS09745 () | 2024076..2024861 | - | 786 | WP_000571508.1 | ATP-dependent RecD-like DNA helicase | VF |
| PQP94_RS09750 () | 2024858..2025613 | - | 756 | WP_000203014.1 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | VF |
| PQP94_RS09755 () | 2025692..2026636 | + | 945 | WP_000939597.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| PQP94_RS09760 () | 2026652..2027971 | + | 1320 | WP_001184028.1 | murein DD-endopeptidase MepM | - |
| PQP94_RS09765 () | 2028088..2029059 | + | 972 | WP_000448401.1 | Alkaline phosphatase | VF |
| PQP94_RS09770 () | 2029132..2030574 | - | 1443 | WP_274895936.1 | pyruvate kinase | - |
| PQP94_RS09775 () | 2030698..2031567 | - | 870 | WP_001056720.1 | MurR/RpiR family transcriptional regulator | - |
| PQP94_RS09780 () | 2031909..2033384 | + | 1476 | WP_000301711.1 | glucose-6-phosphate dehydrogenase | - |
| PQP94_RS09785 () | 2033619..2035430 | + | 1812 | WP_001069113.1 | phosphogluconate dehydratase | - |
| PQP94_RS09790 () | 2035468..2036109 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| PQP94_RS09795 () | 2036209..2037387 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PQP94_RS09800 () | 2037518..2037808 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| PQP94_RS09805 () | 2037876..2038229 | + | 354 | WP_001042119.1 | protein YebF | - |
| PQP94_RS09810 () | 2038323..2038982 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| PQP94_RS09815 () | 2039195..2041246 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| PQP94_RS09820 () | 2041281..2041979 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| PQP94_RS09825 () | 2042003..2042659 | - | 657 | WP_274895937.1 | carbon-nitrogen hydrolase family protein | - |
| PQP94_RS09830 () | 2042767..2042997 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PQP94_RS09835 () | 2043135..2043509 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| PQP94_RS09840 () | 2043510..2044385 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| PQP94_RS09845 () | 2044402..2044755 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2044855..2045000 | - | 146 | - | - | Antitoxin Detail |
| - | 2044895..2044998 | + | 104 | - | - | Toxin Detail |
| PQP94_RS09850 () | 2045129..2046052 | - | 924 | Protein_1924 | Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha ; Integrase | Integrase |
| PQP94_RS09855 () | 2046316..2046777 | - | 462 | Protein_1925 | DNA breaking-rejoining protein | - |
| PQP94_RS09860 () | 2046766..2046957 | + | 192 | Protein_1926 | glycoside hydrolase family 19 protein | - |
| PQP94_RS09865 () | 2047011..2047544 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| PQP94_RS09870 () | 2047801..2047968 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| PQP94_RS09875 () | 2048033..2048221 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| PQP94_RS09880 () | 2048276..2048536 | + | 261 | Protein_1930 | DUF1441 family protein | - |
| PQP94_RS09885 () | 2048751..2049095 | + | 345 | Protein_1931 | macro domain-containing protein | - |
| PQP94_RS09890 () | 2049105..2049575 | + | 471 | Protein_1932 | tail fiber assembly protein | - |
| PQP94_RS09895 () | 2049672..2049872 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| PQP94_RS09900 () | 2050262..2050442 | - | 181 | Protein_1934 | IS3 family transposase | - |
| PQP94_RS09905 () | 2050442..2050567 | + | 126 | WP_000457876.1 | hypothetical protein | - |
| PQP94_RS09910 () | 2051081..2051227 | - | 147 | WP_001520350.1 | hypothetical protein | - |
| PQP94_RS09915 () | 2051221..2051388 | + | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| PQP94_RS09920 () | 2051715..2052329 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| PQP94_RS09925 () | 2052339..2052497 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| PQP94_RS09930 () | 2052630..2053544 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| PQP94_RS09935 () | 2054848..2055270 | - | 423 | Protein_1941 | 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ ; Integrase | Integrase |
| PQP94_RS09940 () | 2055340..2056534 | + | 1195 | Protein_1942 | IS256 family transposase IS285 | Transposase |
| PQP94_RS09945 () | 2056680..2056820 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| PQP94_RS09950 () | 2056986..2057255 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| PQP94_RS09955 () | 2057625..2058044 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| PQP94_RS09960 () | 2058432..2058908 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| PQP94_RS09965 () | 2059238..2059633 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| PQP94_RS09970 () | 2060316..2061038 | + | 723 | WP_000182072.1 | hypothetical protein | VF |
| PQP94_RS09975 () | 2061323..2061487 | + | 165 | WP_001134856.1 | membrane protein | - |
| PQP94_RS09980 () | 2061711..2062361 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| PQP94_RS09985 () | 2062380..2062571 | - | 192 | WP_000457836.1 | YebW family protein | - |
| PQP94_RS09990 () | 2062682..2062918 | - | 237 | WP_024131108.1 | YebV family protein | - |
| PQP94_RS09995 () | 2063036..2064475 | - | 1440 | WP_274895938.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PQP94_RS10000 () | 2064553..2067186 | - | 2634 | WP_001535256.1 | Multiple antibiotic resistance protein MarR | VF |
| PQP94_RS10005 () | 2067155..2068438 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| PQP94_RS10010 () | 2068567..2069064 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| PQP94_RS10015 () | 2069162..2069848 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| PQP94_RS10020 () | 2069868..2071916 | + | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| PQP94_RS10025 () | 2072110..2072991 | + | 882 | WP_000984498.1 | protease HtpX | - |
| PQP94_RS10030 () | 2073039..2074412 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| PQP94_RS10035 () | 2074588..2075379 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| PQP94_RS10040 () | 2075591..2075830 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| PQP94_RS10045 () | 2075988..2076131 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| PQP94_RS10050 () | 2076202..2076489 | + | 288 | WP_001000660.1 | YebO family protein | - |
| PQP94_RS10055 () | 2077138..2077281 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| PQP94_RS10060 () | 2077294..2077503 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| PQP94_RS10065 () | 2077723..2079468 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| PQP94_RS10070 () | 2079534..2080343 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| PQP94_RS10075 () | 2080340..2080906 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| PQP94_RS10080 () | 2081316..2081774 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0.009 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0.009 |