MGE detailed information
MGE type: Prophage MGE length: 40002 bp
Accession: NZ_CP085696 Location: 2002388..2042389 Organism: Salmonella enterica subsp. enterica serovar Saintpaul strain S25 Replicon: chromosome
Accession: NZ_CP085696 Location: 2002388..2042389 Organism: Salmonella enterica subsp. enterica serovar Saintpaul strain S25 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJN58_RS09645 () | 1998489..2000300 | + | 1812 | WP_001069113.1 | phosphogluconate dehydratase | - |
| LJN58_RS09650 () | 2000338..2000979 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| LJN58_RS09655 () | 2001079..2002257 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| LJN58_RS09660 () | 2002388..2002678 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| LJN58_RS09665 () | 2002746..2003099 | + | 354 | WP_001042119.1 | protein YebF | - |
| LJN58_RS09670 () | 2003193..2003852 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| LJN58_RS09675 () | 2004065..2006116 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| LJN58_RS09680 () | 2006151..2006849 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| LJN58_RS09685 () | 2006873..2007529 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| LJN58_RS09690 () | 2007637..2007867 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| LJN58_RS09695 () | 2008005..2008379 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| LJN58_RS09700 () | 2008380..2009255 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| LJN58_RS09705 () | 2009272..2009625 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2009725..2009870 | - | 146 | - | - | Antitoxin Detail |
| - | 2009765..2009868 | + | 104 | - | - | Toxin Detail |
| LJN58_RS09710 () | 2009999..2010922 | - | 924 | Protein_1897 | hypothetical protein ; Integrase | Integrase |
| LJN58_RS09715 () | 2011186..2011647 | - | 462 | Protein_1898 | DNA breaking-rejoining protein | - |
| LJN58_RS09720 () | 2011636..2011827 | + | 192 | Protein_1899 | glycoside hydrolase family 19 protein | - |
| LJN58_RS09725 () | 2011881..2012414 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| LJN58_RS09730 () | 2012671..2012838 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| LJN58_RS09735 () | 2012903..2013091 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| LJN58_RS09740 () | 2013146..2013406 | + | 261 | Protein_1903 | DUF1441 family protein | - |
| LJN58_RS25185 () | 2013408..2013623 | + | 216 | Protein_1904 | shikimate transporter | - |
| LJN58_RS25190 () | 2013621..2013965 | + | 345 | Protein_1905 | macro domain-containing protein | - |
| LJN58_RS09750 () | 2013975..2014445 | + | 471 | Protein_1906 | tail fiber assembly protein | - |
| LJN58_RS09755 () | 2014542..2014742 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| LJN58_RS09760 () | 2015132..2015312 | - | 181 | Protein_1908 | IS3 family transposase | - |
| LJN58_RS09765 () | 2015303..2015404 | + | 102 | Protein_1909 | arsenic transporter | - |
| LJN58_RS09770 () | 2016026..2016258 | + | 233 | Protein_1910 | helix-turn-helix domain-containing protein | - |
| LJN58_RS09775 () | 2016585..2017199 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| LJN58_RS09780 () | 2017209..2017367 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| LJN58_RS09785 () | 2017500..2018414 | - | 915 | WP_001233445.1 | DMT family transporter | - |
| LJN58_RS09790 () | 2019717..2020139 | - | 423 | Protein_1914 | hypothetical protein ; Integrase | Integrase |
| LJN58_RS09795 () | 2020209..2021417 | + | 1209 | WP_000343625.1 | IS256 family transposase ISEc39 | Transposase |
| LJN58_RS09800 () | 2021563..2021703 | - | 141 | WP_001576018.1 | hypothetical protein | - |
| LJN58_RS09805 () | 2021869..2022138 | - | 270 | WP_012664556.1 | hypothetical protein | - |
| LJN58_RS09810 () | 2022511..2022930 | + | 420 | WP_000354407.1 | GNAT family N-acetyltransferase | - |
| LJN58_RS09815 () | 2023318..2023794 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| LJN58_RS09820 () | 2024123..2024518 | - | 396 | WP_000422880.1 | DUF1398 domain-containing protein | - |
| LJN58_RS09825 () | 2025202..2025924 | + | 723 | WP_000182072.1 | hypothetical protein | VF |
| LJN58_RS09830 () | 2026209..2026373 | + | 165 | WP_001134856.1 | membrane protein | - |
| LJN58_RS09835 () | 2026597..2027247 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| LJN58_RS09840 () | 2027266..2027457 | - | 192 | WP_000457836.1 | YebW family protein | - |
| LJN58_RS09845 () | 2027568..2027804 | - | 237 | WP_024131108.1 | YebV family protein | - |
| LJN58_RS09850 () | 2027922..2029361 | - | 1440 | WP_023181135.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LJN58_RS09855 () | 2029439..2032072 | - | 2634 | WP_001521100.1 | hypothetical protein | VF |
| LJN58_RS09860 () | 2032041..2033324 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| LJN58_RS09865 () | 2033453..2033950 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| LJN58_RS09870 () | 2034048..2034734 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| LJN58_RS09875 () | 2034754..2036802 | + | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| LJN58_RS09880 () | 2036996..2037877 | + | 882 | WP_000984498.1 | protease HtpX | - |
| LJN58_RS09885 () | 2037925..2039298 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| LJN58_RS09890 () | 2039474..2040265 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| LJN58_RS09895 () | 2040477..2040716 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| LJN58_RS09900 () | 2040874..2041017 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| LJN58_RS09905 () | 2041088..2041375 | + | 288 | WP_001000660.1 | YebO family protein | - |
| LJN58_RS09910 () | 2042024..2042167 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| LJN58_RS09915 () | 2042180..2042389 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| LJN58_RS09920 () | 2042609..2044354 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| LJN58_RS09925 () | 2044420..2045229 | + | 810 | WP_000010930.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| LJN58_RS09930 () | 2045226..2045792 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| LJN58_RS09935 () | 2046202..2046660 | - | 459 | WP_000156274.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0.005 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0.005 |