Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2059984..2060129 Replicon chromosome
Accession NZ_CP077704
Organism Salmonella enterica subsp. enterica strain CFSAN058565

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2060024..2060127 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2059984..2060129 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DBO17_RS09935 2056410..2057108 - 699 WP_000944284.1 exodeoxyribonuclease X -
DBO17_RS09940 2057132..2057788 - 657 WP_000100256.1 nitrilase-related carbon-nitrogen hydrolase -
DBO17_RS09945 2057896..2058126 - 231 WP_000856224.1 DNA polymerase III subunit theta -
DBO17_RS09950 2058264..2058638 + 375 WP_000168393.1 CopC domain-containing protein YobA -
DBO17_RS09955 2058639..2059514 + 876 WP_000979694.1 copper homeostasis membrane protein CopD -
DBO17_RS09960 2059531..2059884 + 354 WP_000722367.1 YebY family protein -
- 2059984..2060129 - 146 - - Antitoxin
- 2060024..2060127 + 104 - - Toxin
DBO17_RS09965 2060267..2061346 - 1080 WP_038803962.1 phage integrase Arm DNA-binding domain-containing protein -
DBO17_RS09970 2061379..2062530 - 1152 Protein_1959 PD-(D/E)XK nuclease-like domain-containing protein -
DBO17_RS09975 2062519..2062710 + 192 Protein_1960 glycoside hydrolase family 19 protein -
DBO17_RS09980 2062764..2063297 + 534 WP_001050883.1 DUF2514 domain-containing protein -
DBO17_RS09985 2063554..2063721 - 168 WP_000789530.1 lytic enzyme -
DBO17_RS09990 2064029..2064289 + 261 Protein_1963 DUF1441 family protein -
DBO17_RS24065 2064291..2064506 + 216 Protein_1964 shikimate transporter -
DBO17_RS09995 2064504..2064848 + 345 Protein_1965 macro domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Prophage - sopE2 2054322..2092246 37924


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T207586 NZ_CP077704:2060024-2060127 [Salmonella enterica subsp. enterica]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 146 bp

>AT207586 NZ_CP077704:c2060129-2059984 [Salmonella enterica subsp. enterica]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References