MGE detailed information
MGE type: Prophage MGE length: 38902 bp
Accession: NZ_CP117696 Location: 1951158..1990059 Organism: Salmonella enterica subsp. enterica serovar London strain F1 Replicon: chromosome
Accession: NZ_CP117696 Location: 1951158..1990059 Organism: Salmonella enterica subsp. enterica serovar London strain F1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PTQ22_RS09290 () | 1947431..1948072 | + | 642 | WP_000800495.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| PTQ22_RS09295 () | 1948172..1949350 | - | 1179 | WP_058805752.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PTQ22_RS09300 () | 1949481..1949771 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| PTQ22_RS09305 () | 1949839..1950192 | + | 354 | WP_001042123.1 | protein YebF | - |
| PTQ22_RS09310 () | 1950286..1950945 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| PTQ22_RS09315 () | 1951158..1953209 | + | 2052 | WP_000936990.1 | oligopeptidase B | - |
| PTQ22_RS09320 () | 1953246..1953944 | - | 699 | WP_023255939.1 | exodeoxyribonuclease X | - |
| PTQ22_RS09325 () | 1953968..1954624 | - | 657 | WP_023245437.1 | carbon-nitrogen hydrolase family protein | - |
| PTQ22_RS09330 () | 1954732..1954962 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PTQ22_RS09335 () | 1955100..1955474 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| PTQ22_RS09340 () | 1955475..1956350 | + | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| PTQ22_RS09345 () | 1956367..1956720 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 1956822..1956965 | - | 144 | - | - | Antitoxin Detail |
| - | 1956861..1956963 | + | 103 | - | - | Toxin Detail |
| PTQ22_RS09350 () | 1957103..1958182 | - | 1080 | WP_058107134.1 | Aryl-phospho-beta-D-glucosidase BglH ; Integrase | Integrase |
| PTQ22_RS09355 () | 1958215..1959366 | - | 1152 | Protein_1827 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| PTQ22_RS09360 () | 1959355..1959546 | + | 192 | Protein_1828 | glycoside hydrolase family 19 protein | - |
| PTQ22_RS09365 () | 1959600..1960133 | + | 534 | WP_023256014.1 | DUF2514 domain-containing protein | - |
| PTQ22_RS09370 () | 1960390..1960557 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| PTQ22_RS09375 () | 1960622..1960810 | - | 189 | WP_001034748.1 | hypothetical protein | - |
| PTQ22_RS09380 () | 1960865..1961125 | + | 261 | Protein_1832 | DUF1441 family protein | - |
| PTQ22_RS09385 () | 1961127..1961342 | + | 216 | Protein_1833 | shikimate transporter | - |
| PTQ22_RS09390 () | 1961352..1961639 | + | 288 | Protein_1834 | macro domain-containing protein | - |
| PTQ22_RS09395 () | 1961652..1962163 | + | 512 | Protein_1835 | tail fiber assembly protein | - |
| PTQ22_RS09400 () | 1962260..1962460 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| PTQ22_RS09405 () | 1962850..1963030 | - | 181 | Protein_1837 | IS3 family transposase | - |
| PTQ22_RS09410 () | 1963030..1963155 | + | 126 | WP_000457876.1 | hypothetical protein | - |
| PTQ22_RS09415 () | 1963809..1963976 | + | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| PTQ22_RS09420 () | 1964303..1964917 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| PTQ22_RS09425 () | 1964927..1965085 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| PTQ22_RS09430 () | 1965218..1966132 | - | 915 | WP_001233445.1 | DMT family transporter | - |
| PTQ22_RS09435 () | 1967418..1967840 | - | 423 | Protein_1843 | hypothetical protein ; Integrase | Integrase |
| PTQ22_RS09440 () | 1967910..1969104 | + | 1195 | Protein_1844 | IS256 family transposase IS285 | Transposase |
| PTQ22_RS09445 () | 1969250..1969390 | - | 141 | WP_038390064.1 | hypothetical protein | - |
| PTQ22_RS09450 () | 1969556..1969825 | - | 270 | WP_077914367.1 | hypothetical protein | - |
| PTQ22_RS09455 () | 1970196..1970615 | + | 420 | WP_000354407.1 | GNAT family N-acetyltransferase | - |
| PTQ22_RS09460 () | 1970988..1971464 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| PTQ22_RS09465 () | 1971794..1972189 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| PTQ22_RS09470 () | 1972873..1973595 | + | 723 | WP_000182072.1 | hypothetical protein | VF |
| PTQ22_RS09475 () | 1973880..1974044 | + | 165 | WP_001134856.1 | membrane protein | - |
| PTQ22_RS09480 () | 1974268..1974918 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| PTQ22_RS09485 () | 1974937..1975128 | - | 192 | WP_000457836.1 | YebW family protein | - |
| PTQ22_RS09490 () | 1975239..1975475 | - | 237 | WP_024131108.1 | YebV family protein | - |
| PTQ22_RS09495 () | 1975593..1977032 | - | 1440 | WP_001531515.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PTQ22_RS09500 () | 1977110..1979743 | - | 2634 | WP_001521100.1 | hypothetical protein | VF |
| PTQ22_RS09505 () | 1979712..1980995 | - | 1284 | WP_001207293.1 | membrane integrity lipid transport subunit YebS | - |
| PTQ22_RS09510 () | 1981124..1981621 | + | 498 | WP_058805750.1 | GAF domain-containing protein | - |
| PTQ22_RS09515 () | 1981719..1982405 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| PTQ22_RS09520 () | 1982425..1984473 | + | 2049 | WP_001091234.1 | carboxy terminal-processing peptidase | - |
| PTQ22_RS09525 () | 1984666..1985547 | + | 882 | WP_000984498.1 | protease HtpX | - |
| PTQ22_RS09530 () | 1985595..1986968 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| PTQ22_RS09535 () | 1987144..1987935 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| PTQ22_RS09540 () | 1988147..1988386 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| PTQ22_RS09545 () | 1988544..1988687 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| PTQ22_RS09550 () | 1988758..1989045 | + | 288 | WP_001000660.1 | YebO family protein | - |
| PTQ22_RS09555 () | 1989694..1989837 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| PTQ22_RS09560 () | 1989850..1990059 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| PTQ22_RS09565 () | 1990279..1992024 | + | 1746 | WP_000730326.1 | peptidoglycan glycosyltransferase FtsI | - |
| PTQ22_RS09570 () | 1992090..1992899 | + | 810 | WP_000010924.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| PTQ22_RS09575 () | 1992896..1993462 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| PTQ22_RS09580 () | 1993872..1994330 | - | 459 | WP_000156274.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0.007 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0.007 |