MGE detailed information
MGE type: Prophage MGE length: 37925 bp
Accession: NZ_CP077704 Location: 2054322..2092246 Organism: Salmonella enterica subsp. enterica strain CFSAN058565 Replicon: chromosome
Accession: NZ_CP077704 Location: 2054322..2092246 Organism: Salmonella enterica subsp. enterica strain CFSAN058565 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DBO17_RS09905 () | 2050594..2051235 | + | 642 | WP_000800494.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| DBO17_RS09910 () | 2051335..2052513 | - | 1179 | WP_000173430.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| DBO17_RS09915 () | 2052644..2052934 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| DBO17_RS09920 () | 2053002..2053355 | + | 354 | WP_023204510.1 | protein YebF | - |
| DBO17_RS09925 () | 2053449..2054108 | + | 660 | WP_000024709.1 | tellurite resistance TerB family protein | - |
| DBO17_RS09930 () | 2054322..2056373 | + | 2052 | WP_023204511.1 | oligopeptidase B | - |
| DBO17_RS09935 () | 2056410..2057108 | - | 699 | WP_000944284.1 | exodeoxyribonuclease X | - |
| DBO17_RS09940 () | 2057132..2057788 | - | 657 | WP_000100256.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| DBO17_RS09945 () | 2057896..2058126 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| DBO17_RS09950 () | 2058264..2058638 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| DBO17_RS09955 () | 2058639..2059514 | + | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| DBO17_RS09960 () | 2059531..2059884 | + | 354 | WP_000722367.1 | YebY family protein | - |
| - | 2059984..2060129 | - | 146 | - | - | Antitoxin Detail |
| - | 2060024..2060127 | + | 104 | - | - | Toxin Detail |
| DBO17_RS09965 () | 2060267..2061346 | - | 1080 | WP_038803962.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| DBO17_RS09970 () | 2061379..2062530 | - | 1152 | Protein_1959 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| DBO17_RS09975 () | 2062519..2062710 | + | 192 | Protein_1960 | glycoside hydrolase family 19 protein | - |
| DBO17_RS09980 () | 2062764..2063297 | + | 534 | WP_001050883.1 | DUF2514 domain-containing protein | - |
| DBO17_RS09985 () | 2063554..2063721 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| DBO17_RS09990 () | 2064029..2064289 | + | 261 | Protein_1963 | DUF1441 family protein | - |
| DBO17_RS24065 () | 2064291..2064506 | + | 216 | Protein_1964 | shikimate transporter | - |
| DBO17_RS09995 () | 2064504..2064848 | + | 345 | Protein_1965 | macro domain-containing protein | - |
| DBO17_RS10000 () | 2064858..2065328 | + | 471 | Protein_1966 | tail fiber assembly protein | - |
| DBO17_RS10005 () | 2065425..2065625 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| DBO17_RS24070 () | 2066015..2066195 | - | 181 | Protein_1968 | IS3 family transposase | - |
| DBO17_RS10010 () | 2066186..2066287 | + | 102 | Protein_1969 | arsenic transporter | - |
| DBO17_RS24075 () | 2066909..2067141 | + | 233 | Protein_1970 | helix-turn-helix domain-containing protein | - |
| DBO17_RS10025 () | 2067468..2068082 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| DBO17_RS10030 () | 2068092..2068250 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| DBO17_RS10035 () | 2068383..2069297 | - | 915 | WP_001233445.1 | DMT family transporter | - |
| DBO17_RS10040 () | 2070593..2071014 | - | 422 | Protein_1974 | tyrosine-type recombinase/integrase | - |
| DBO17_RS10045 () | 2071085..2072279 | + | 1195 | Protein_1975 | IS256 family transposase | - |
| DBO17_RS10050 () | 2072425..2072574 | - | 150 | WP_181377848.1 | hypothetical protein | - |
| DBO17_RS10055 () | 2072551..2072940 | - | 390 | Protein_1977 | hypothetical protein | - |
| DBO17_RS10060 () | 2073268..2073663 | - | 396 | WP_000422879.1 | DUF1398 domain-containing protein | - |
| DBO17_RS10065 () | 2074347..2075069 | + | 723 | WP_023204535.1 | SPI-1 type III secretion system guanine nucleotide exchange factor SopE2 | - |
| DBO17_RS10070 () | 2075354..2075518 | + | 165 | WP_001134856.1 | membrane protein | - |
| DBO17_RS10075 () | 2075742..2076392 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| DBO17_RS10080 () | 2076411..2076602 | - | 192 | WP_000457838.1 | DUF1482 family protein | - |
| DBO17_RS10085 () | 2076713..2076949 | - | 237 | WP_024131167.1 | YebV family protein | - |
| DBO17_RS10090 () | 2077067..2078506 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DBO17_RS10095 () | 2078584..2081217 | - | 2634 | WP_001535256.1 | PqiB family protein | - |
| DBO17_RS10100 () | 2081186..2082469 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| DBO17_RS10105 () | 2082598..2083095 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| DBO17_RS10110 () | 2083193..2083879 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| DBO17_RS10115 () | 2083899..2085947 | + | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| DBO17_RS10120 () | 2086127..2086585 | + | 459 | WP_000502119.1 | IS200/IS605-like element IS200F family transposase | - |
| DBO17_RS10125 () | 2086853..2087734 | + | 882 | WP_000984498.1 | protease HtpX | - |
| DBO17_RS10130 () | 2087782..2089155 | - | 1374 | WP_000416139.1 | MFS transporter | - |
| DBO17_RS10135 () | 2089331..2090122 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| DBO17_RS10140 () | 2090334..2090573 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| DBO17_RS10145 () | 2090731..2090874 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| DBO17_RS10150 () | 2090945..2091232 | + | 288 | WP_001000660.1 | YebO family protein | - |
| DBO17_RS10155 () | 2091881..2092024 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| DBO17_RS10160 () | 2092037..2092246 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| DBO17_RS10165 () | 2092466..2094211 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| DBO17_RS10170 () | 2094277..2095086 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| DBO17_RS10175 () | 2095083..2095649 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| DBO17_RS10180 () | 2096059..2096517 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0.008 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0.008 |