MGE detailed information
MGE type: Prophage MGE length: 54526 bp
Accession: NZ_CP090529 Location: 2122749..2177274 Organism: Salmonella enterica strain 2008079-SE Replicon: chromosome
Accession: NZ_CP090529 Location: 2122749..2177274 Organism: Salmonella enterica strain 2008079-SE Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L0F60_RS10375 () | 2117805..2118257 | + | 453 | WP_000653693.1 | dihydroneopterin triphosphate diphosphatase | - |
| L0F60_RS10380 () | 2118287..2119027 | + | 741 | WP_000907242.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| L0F60_RS10385 () | 2119064..2119585 | + | 522 | WP_000022509.1 | crossover junction endodeoxyribonuclease RuvC | - |
| L0F60_RS10390 () | 2119587..2120186 | - | 600 | WP_000716748.1 | YebB family permuted papain-like enzyme | - |
| L0F60_RS10395 () | 2120813..2121709 | - | 897 | WP_010989032.1 | DUF4034 domain-containing protein | - |
| L0F60_RS10400 () | 2122129..2122740 | + | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| L0F60_RS10405 () | 2122749..2123759 | + | 1011 | WP_000568508.1 | Holliday junction ATP-dependent DNA helicase RuvB | VF |
| L0F60_RS10410 () | 2123838..2124623 | - | 786 | WP_000571508.1 | hypothetical protein | VF |
| L0F60_RS10415 () | 2124620..2125375 | - | 756 | WP_000203014.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| L0F60_RS10420 () | 2125454..2126398 | + | 945 | WP_000939597.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| L0F60_RS10425 () | 2126414..2127733 | + | 1320 | WP_001184028.1 | murein DD-endopeptidase MepM | - |
| L0F60_RS10430 () | 2127850..2128821 | + | 972 | WP_000448401.1 | Lipid A biosynthesis myristoyltransferase | VF |
| L0F60_RS10435 () | 2128894..2130336 | - | 1443 | WP_000091156.1 | pyruvate kinase | - |
| L0F60_RS10440 () | 2130460..2131329 | - | 870 | WP_001056720.1 | MurR/RpiR family transcriptional regulator | - |
| L0F60_RS10445 () | 2131671..2133146 | + | 1476 | WP_000301711.1 | glucose-6-phosphate dehydrogenase | - |
| L0F60_RS10450 () | 2133381..2135192 | + | 1812 | WP_001069113.1 | phosphogluconate dehydratase | - |
| L0F60_RS10455 () | 2135230..2135871 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| L0F60_RS10460 () | 2135971..2137149 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| L0F60_RS10465 () | 2137280..2137570 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| L0F60_RS10470 () | 2137638..2137991 | + | 354 | WP_001042119.1 | protein YebF | - |
| L0F60_RS10475 () | 2138085..2138744 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| L0F60_RS10480 () | 2138957..2141008 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| L0F60_RS10485 () | 2141043..2141741 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| L0F60_RS10490 () | 2141765..2142421 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| L0F60_RS10495 () | 2142529..2142759 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| L0F60_RS10500 () | 2142897..2143271 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| L0F60_RS10505 () | 2143272..2144147 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| L0F60_RS10510 () | 2144164..2144517 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2144617..2144762 | - | 146 | - | - | Antitoxin Detail |
| - | 2144657..2144760 | + | 104 | - | - | Toxin Detail |
| L0F60_RS10515 () | 2144891..2145814 | - | 924 | Protein_2063 | hypothetical protein ; Integrase | Integrase |
| L0F60_RS10520 () | 2146078..2146539 | - | 462 | Protein_2064 | DNA breaking-rejoining protein | - |
| L0F60_RS10525 () | 2146528..2146719 | + | 192 | Protein_2065 | glycoside hydrolase family 19 protein | - |
| L0F60_RS10530 () | 2146773..2147306 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| L0F60_RS10535 () | 2147563..2147730 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| L0F60_RS10540 () | 2147795..2147983 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| L0F60_RS10545 () | 2148038..2148298 | + | 261 | Protein_2069 | DUF1441 family protein | - |
| L0F60_RS10550 () | 2148513..2148857 | + | 345 | Protein_2070 | macro domain-containing protein | - |
| L0F60_RS10555 () | 2148867..2149337 | + | 471 | Protein_2071 | tail fiber assembly protein | - |
| L0F60_RS10560 () | 2149434..2149634 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| L0F60_RS10565 () | 2150024..2150204 | - | 181 | Protein_2073 | IS3 family transposase | - |
| L0F60_RS10570 () | 2150204..2150329 | + | 126 | WP_000457876.1 | hypothetical protein | - |
| L0F60_RS26160 () | 2150843..2150989 | - | 147 | WP_001520350.1 | hypothetical protein | - |
| L0F60_RS10575 () | 2150983..2151150 | + | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| L0F60_RS10580 () | 2151477..2152091 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| L0F60_RS10585 () | 2152101..2152259 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| L0F60_RS10590 () | 2152392..2153306 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| L0F60_RS10595 () | 2154619..2155041 | - | 423 | Protein_2080 | hypothetical protein ; Integrase | Integrase |
| L0F60_RS10600 () | 2155111..2156305 | + | 1195 | Protein_2081 | IS256 family transposase IS285 | Transposase |
| L0F60_RS10605 () | 2156451..2156591 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| L0F60_RS10610 () | 2156757..2157026 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| L0F60_RS10615 () | 2157396..2157815 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| L0F60_RS10620 () | 2158203..2158679 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| L0F60_RS10625 () | 2159009..2159404 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| L0F60_RS10630 () | 2160087..2160809 | + | 723 | WP_000182072.1 | hypothetical protein | VF |
| L0F60_RS10635 () | 2161094..2161258 | + | 165 | WP_001134856.1 | membrane protein | - |
| L0F60_RS10640 () | 2161482..2162132 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| L0F60_RS10645 () | 2162151..2162342 | - | 192 | WP_000457836.1 | YebW family protein | - |
| L0F60_RS10650 () | 2162453..2162689 | - | 237 | WP_024131108.1 | YebV family protein | - |
| L0F60_RS10655 () | 2162807..2164246 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| L0F60_RS10660 () | 2164324..2166957 | - | 2634 | WP_001535256.1 | hypothetical protein | VF |
| L0F60_RS10665 () | 2166926..2168209 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| L0F60_RS10670 () | 2168338..2168835 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| L0F60_RS10675 () | 2168933..2169619 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| L0F60_RS10680 () | 2169639..2171687 | + | 2049 | WP_033567178.1 | carboxy terminal-processing peptidase | - |
| L0F60_RS10685 () | 2171881..2172762 | + | 882 | WP_000984498.1 | protease HtpX | - |
| L0F60_RS10690 () | 2172810..2174183 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| L0F60_RS10695 () | 2174359..2175150 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| L0F60_RS10700 () | 2175362..2175601 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| L0F60_RS10705 () | 2175759..2175902 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| L0F60_RS10710 () | 2175973..2176260 | + | 288 | WP_001000660.1 | YebO family protein | - |
| L0F60_RS10715 () | 2176909..2177052 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| L0F60_RS10720 () | 2177065..2177274 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| L0F60_RS10725 () | 2177494..2179239 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| L0F60_RS10730 () | 2179305..2180114 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| L0F60_RS10735 () | 2180111..2180677 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| L0F60_RS10740 () | 2181087..2181545 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0.009 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0.009 |