Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 3216094..3216239 Replicon chromosome
Accession NC_021820
Organism Salmonella enterica subsp. enterica serovar 4,5,12:i:- str.

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 3216096..3216199 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 3216094..3216239 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
- 3216094..3216239 + 146 NuclAT_1 - Antitoxin
- 3216096..3216199 - 104 NuclT_0 - Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Prophage - sopE2 3183590..3238108 54518


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T29825 NC_021820:c3216199-3216096 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str.]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 146 bp

>AT29825 NC_021820:3216094-3216239 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str.]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References