MGE detailed information
MGE type: Prophage MGE length: 54526 bp
Accession: NZ_CP047544 Location: 2152982..2207507 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10250 Replicon: chromosome
Accession: NZ_CP047544 Location: 2152982..2207507 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10250 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DXN29_RS10540 () | 2148038..2148490 | + | 453 | WP_000653693.1 | dihydroneopterin triphosphate diphosphatase | - |
| DXN29_RS10545 () | 2148520..2149260 | + | 741 | WP_000907242.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| DXN29_RS10550 () | 2149297..2149818 | + | 522 | WP_000022509.1 | crossover junction endodeoxyribonuclease RuvC | - |
| DXN29_RS10555 () | 2149820..2150419 | - | 600 | WP_000716748.1 | YebB family permuted papain-like enzyme | - |
| DXN29_RS10560 () | 2151046..2151942 | - | 897 | WP_010989032.1 | DUF4034 domain-containing protein | - |
| DXN29_RS10565 () | 2152362..2152973 | + | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| DXN29_RS10570 () | 2152982..2153992 | + | 1011 | WP_000568508.1 | hypothetical protein | VF |
| DXN29_RS10575 () | 2154071..2154856 | - | 786 | WP_000571508.1 | hypothetical protein | VF |
| DXN29_RS10580 () | 2154853..2155608 | - | 756 | WP_000203014.1 | hypothetical protein | VF |
| DXN29_RS10585 () | 2155687..2156631 | + | 945 | WP_000939597.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| DXN29_RS10590 () | 2156647..2157966 | + | 1320 | WP_001184028.1 | murein DD-endopeptidase MepM | - |
| DXN29_RS10595 () | 2158083..2159054 | + | 972 | WP_000448401.1 | hypothetical protein | VF |
| DXN29_RS10600 () | 2159127..2160569 | - | 1443 | WP_000091156.1 | pyruvate kinase | - |
| DXN29_RS10605 () | 2160693..2161562 | - | 870 | WP_001056720.1 | MurR/RpiR family transcriptional regulator | - |
| DXN29_RS10610 () | 2161904..2163379 | + | 1476 | WP_000301711.1 | glucose-6-phosphate dehydrogenase | - |
| DXN29_RS10615 () | 2163614..2165425 | + | 1812 | WP_001069113.1 | phosphogluconate dehydratase | - |
| DXN29_RS10620 () | 2165463..2166104 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| DXN29_RS10625 () | 2166204..2167382 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| DXN29_RS10630 () | 2167513..2167803 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| DXN29_RS10635 () | 2167871..2168224 | + | 354 | WP_001042119.1 | protein YebF | - |
| DXN29_RS10640 () | 2168318..2168977 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| DXN29_RS10645 () | 2169190..2171241 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| DXN29_RS10650 () | 2171276..2171974 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| DXN29_RS10655 () | 2171998..2172654 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| DXN29_RS10660 () | 2172762..2172992 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| DXN29_RS10665 () | 2173130..2173504 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| DXN29_RS10670 () | 2173505..2174380 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| DXN29_RS10675 () | 2174397..2174750 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2174850..2174995 | - | 146 | - | - | Antitoxin Detail |
| - | 2174890..2174993 | + | 104 | - | - | Toxin Detail |
| DXN29_RS10680 () | 2175124..2176047 | - | 924 | Protein_2095 | hypothetical protein ; Integrase | Integrase |
| DXN29_RS10685 () | 2176311..2176772 | - | 462 | Protein_2096 | DNA breaking-rejoining protein | - |
| DXN29_RS10690 () | 2176761..2176952 | + | 192 | Protein_2097 | glycoside hydrolase family 19 protein | - |
| DXN29_RS10695 () | 2177006..2177539 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| DXN29_RS10700 () | 2177796..2177963 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| DXN29_RS10705 () | 2178028..2178216 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| DXN29_RS10710 () | 2178271..2178531 | + | 261 | Protein_2101 | DUF1441 family protein | - |
| DXN29_RS10715 () | 2178746..2179090 | + | 345 | Protein_2102 | macro domain-containing protein | - |
| DXN29_RS10720 () | 2179100..2179570 | + | 471 | Protein_2103 | tail fiber assembly protein | - |
| DXN29_RS10725 () | 2179667..2179867 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| DXN29_RS10730 () | 2180257..2180437 | - | 181 | Protein_2105 | IS3 family transposase | - |
| DXN29_RS10735 () | 2180437..2180562 | + | 126 | WP_000457876.1 | hypothetical protein | - |
| DXN29_RS25940 () | 2181076..2181222 | - | 147 | WP_001520350.1 | hypothetical protein | - |
| DXN29_RS10740 () | 2181216..2181383 | + | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| DXN29_RS10745 () | 2181710..2182324 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| DXN29_RS10750 () | 2182334..2182492 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| DXN29_RS10755 () | 2182625..2183539 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| DXN29_RS10760 () | 2184852..2185274 | - | 423 | Protein_2112 | hypothetical protein ; Integrase | Integrase |
| DXN29_RS10765 () | 2185344..2186538 | + | 1195 | Protein_2113 | IS256 family transposase IS285 | Transposase |
| DXN29_RS10770 () | 2186684..2186824 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| DXN29_RS10775 () | 2186990..2187259 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| DXN29_RS10780 () | 2187629..2188048 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| DXN29_RS10785 () | 2188436..2188912 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| DXN29_RS10790 () | 2189242..2189637 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| DXN29_RS10795 () | 2190320..2191042 | + | 723 | WP_000182072.1 | hypothetical protein | VF |
| DXN29_RS10800 () | 2191327..2191491 | + | 165 | WP_001134856.1 | membrane protein | - |
| DXN29_RS10805 () | 2191715..2192365 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| DXN29_RS10810 () | 2192384..2192575 | - | 192 | WP_000457836.1 | YebW family protein | - |
| DXN29_RS10815 () | 2192686..2192922 | - | 237 | WP_024131108.1 | YebV family protein | - |
| DXN29_RS10820 () | 2193040..2194479 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DXN29_RS10825 () | 2194557..2197190 | - | 2634 | WP_001535256.1 | hypothetical protein | VF |
| DXN29_RS10830 () | 2197159..2198442 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| DXN29_RS10835 () | 2198571..2199068 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| DXN29_RS10840 () | 2199166..2199852 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| DXN29_RS10845 () | 2199872..2201920 | + | 2049 | WP_033567178.1 | carboxy terminal-processing peptidase | - |
| DXN29_RS10850 () | 2202114..2202995 | + | 882 | WP_000984498.1 | protease HtpX | - |
| DXN29_RS10855 () | 2203043..2204416 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| DXN29_RS10860 () | 2204592..2205383 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| DXN29_RS10865 () | 2205595..2205834 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| DXN29_RS10870 () | 2205992..2206135 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| DXN29_RS10875 () | 2206206..2206493 | + | 288 | WP_001000660.1 | YebO family protein | - |
| DXN29_RS10880 () | 2207142..2207285 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| DXN29_RS10885 () | 2207298..2207507 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| DXN29_RS10890 () | 2207727..2209472 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| DXN29_RS10895 () | 2209538..2210347 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| DXN29_RS10900 () | 2210344..2210910 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| DXN29_RS10905 () | 2211320..2211778 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0.01 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0.009 |