MGE detailed information
MGE type: Prophage MGE length: 54525 bp
Accession: NZ_AP023300 Location: 2065261..2119785 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4445 Replicon: chromosome
Accession: NZ_AP023300 Location: 2065261..2119785 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4445 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5630_RS10045 () | 2060317..2060769 | + | 453 | WP_000653693.1 | dihydroneopterin triphosphate diphosphatase | - |
| K5630_RS10050 () | 2060799..2061539 | + | 741 | WP_000907242.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| K5630_RS10055 () | 2061576..2062097 | + | 522 | WP_000022509.1 | crossover junction endodeoxyribonuclease RuvC | - |
| K5630_RS10060 () | 2062099..2062698 | - | 600 | WP_000716748.1 | YebB family permuted papain-like enzyme | - |
| K5630_RS10065 () | 2063325..2064221 | - | 897 | WP_010989032.1 | DUF4034 domain-containing protein | - |
| K5630_RS10070 () | 2064641..2065252 | + | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| K5630_RS10075 () | 2065261..2066271 | + | 1011 | WP_000568508.1 | Holliday junction ATP-dependent DNA helicase RuvB | VF |
| K5630_RS10080 () | 2066350..2067135 | - | 786 | WP_000571508.1 | hypothetical protein | VF |
| K5630_RS10085 () | 2067132..2067887 | - | 756 | WP_000203014.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| K5630_RS10090 () | 2067966..2068910 | + | 945 | WP_000939597.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| K5630_RS10095 () | 2068926..2070245 | + | 1320 | WP_001184028.1 | murein DD-endopeptidase MepM | - |
| K5630_RS10100 () | 2070362..2071333 | + | 972 | WP_000448401.1 | Lipid A biosynthesis myristoyltransferase | VF |
| K5630_RS10105 () | 2071406..2072848 | - | 1443 | WP_000091156.1 | pyruvate kinase | - |
| K5630_RS10110 () | 2072972..2073841 | - | 870 | WP_001056720.1 | MurR/RpiR family transcriptional regulator | - |
| K5630_RS10115 () | 2074183..2075658 | + | 1476 | WP_000301711.1 | glucose-6-phosphate dehydrogenase | - |
| K5630_RS10120 () | 2075893..2077704 | + | 1812 | WP_001069113.1 | phosphogluconate dehydratase | - |
| K5630_RS10125 () | 2077742..2078383 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| K5630_RS10130 () | 2078483..2079661 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| K5630_RS10135 () | 2079792..2080082 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| K5630_RS10140 () | 2080150..2080503 | + | 354 | WP_001042119.1 | protein YebF | - |
| K5630_RS10145 () | 2080597..2081256 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| K5630_RS10150 () | 2081469..2083520 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| K5630_RS10155 () | 2083555..2084253 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| K5630_RS10160 () | 2084277..2084933 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| K5630_RS10165 () | 2085041..2085271 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| K5630_RS10170 () | 2085409..2085783 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| K5630_RS10175 () | 2085784..2086659 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| K5630_RS10180 () | 2086676..2087029 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2087129..2087274 | - | 146 | - | - | Antitoxin Detail |
| - | 2087169..2087272 | + | 104 | - | - | Toxin Detail |
| K5630_RS10185 () | 2087403..2088326 | - | 924 | Protein_2002 | hypothetical protein ; Integrase | Integrase |
| K5630_RS24770 () | 2088590..2089051 | - | 462 | Protein_2003 | DNA breaking-rejoining protein | - |
| K5630_RS10195 () | 2089040..2089231 | + | 192 | Protein_2004 | glycoside hydrolase family 19 protein | - |
| K5630_RS10200 () | 2089285..2089818 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| K5630_RS10205 () | 2090075..2090242 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| K5630_RS10210 () | 2090307..2090495 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| K5630_RS10215 () | 2090550..2090810 | + | 261 | Protein_2008 | DUF1441 family protein | - |
| K5630_RS10220 () | 2091025..2091369 | + | 345 | Protein_2009 | macro domain-containing protein | - |
| K5630_RS10225 () | 2091379..2091849 | + | 471 | Protein_2010 | tail fiber assembly protein | - |
| K5630_RS10230 () | 2091946..2092146 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| K5630_RS24775 () | 2092536..2092716 | - | 181 | Protein_2012 | IS3 family transposase | - |
| K5630_RS10235 () | 2092707..2092808 | + | 102 | Protein_2013 | arsenic transporter | - |
| K5630_RS24780 () | 2093430..2093662 | + | 233 | Protein_2014 | helix-turn-helix domain-containing protein | - |
| K5630_RS10250 () | 2093989..2094603 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| K5630_RS10255 () | 2094613..2094771 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| K5630_RS10260 () | 2094904..2095818 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| K5630_RS10265 () | 2097131..2097553 | - | 423 | Protein_2018 | hypothetical protein ; Integrase | Integrase |
| K5630_RS10270 () | 2097623..2098817 | + | 1195 | Protein_2019 | IS256 family transposase IS285 | Transposase |
| K5630_RS10275 () | 2098963..2099103 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| K5630_RS10280 () | 2099269..2099538 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| K5630_RS10285 () | 2099908..2100327 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| K5630_RS10290 () | 2100715..2101191 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| K5630_RS10295 () | 2101521..2101916 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| K5630_RS10300 () | 2102599..2103321 | + | 723 | WP_000182072.1 | hypothetical protein | VF |
| K5630_RS10305 () | 2103606..2103770 | + | 165 | WP_001134856.1 | membrane protein | - |
| K5630_RS10310 () | 2103994..2104644 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| K5630_RS10315 () | 2104663..2104854 | - | 192 | WP_000457836.1 | YebW family protein | - |
| K5630_RS10320 () | 2104965..2105201 | - | 237 | WP_024131108.1 | YebV family protein | - |
| K5630_RS10325 () | 2105319..2106758 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| K5630_RS10330 () | 2106836..2109469 | - | 2634 | WP_001535256.1 | hypothetical protein | VF |
| K5630_RS10335 () | 2109438..2110721 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| K5630_RS10340 () | 2110850..2111347 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| K5630_RS10345 () | 2111445..2112131 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| K5630_RS10350 () | 2112151..2114199 | + | 2049 | WP_033567178.1 | carboxy terminal-processing peptidase | - |
| K5630_RS10355 () | 2114392..2115273 | + | 882 | WP_000984498.1 | protease HtpX | - |
| K5630_RS10360 () | 2115321..2116694 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| K5630_RS10365 () | 2116870..2117661 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| K5630_RS10370 () | 2117873..2118112 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| K5630_RS10375 () | 2118270..2118413 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| K5630_RS10380 () | 2118484..2118771 | + | 288 | WP_001000660.1 | YebO family protein | - |
| K5630_RS10385 () | 2119420..2119563 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| K5630_RS10390 () | 2119576..2119785 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| K5630_RS10395 () | 2120005..2121750 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| K5630_RS10400 () | 2121816..2122625 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| K5630_RS10405 () | 2122622..2123188 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| K5630_RS10410 () | 2123598..2124056 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0.009 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0.009 |