MGE detailed information
MGE type: Prophage MGE length: 54526 bp
Accession: NZ_CP110201 Location: 2083122..2137647 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain 1104-65 Replicon: chromosome
Accession: NZ_CP110201 Location: 2083122..2137647 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain 1104-65 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCK73_RS10100 () | 2078178..2078630 | + | 453 | WP_000653693.1 | dihydroneopterin triphosphate diphosphatase | - |
| OCK73_RS10105 () | 2078660..2079400 | + | 741 | WP_000907242.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| OCK73_RS10110 () | 2079437..2079958 | + | 522 | WP_000022509.1 | crossover junction endodeoxyribonuclease RuvC | - |
| OCK73_RS10115 () | 2079960..2080559 | - | 600 | WP_000716748.1 | YebB family permuted papain-like enzyme | - |
| OCK73_RS10120 () | 2081186..2082082 | - | 897 | WP_010989032.1 | DUF4034 domain-containing protein | - |
| OCK73_RS10125 () | 2082502..2083113 | + | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| OCK73_RS10130 () | 2083122..2084132 | + | 1011 | WP_000568508.1 | Holliday junction ATP-dependent DNA helicase RuvB | VF |
| OCK73_RS10135 () | 2084211..2084996 | - | 786 | WP_000571508.1 | High-affinity zinc uptake system membrane protein ZnuB | VF |
| OCK73_RS10140 () | 2084993..2085748 | - | 756 | WP_000203014.1 | Zinc import ATP-binding protein ZnuC | VF |
| OCK73_RS10145 () | 2085827..2086771 | + | 945 | WP_000939597.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| OCK73_RS10150 () | 2086787..2088106 | + | 1320 | WP_001184028.1 | murein DD-endopeptidase MepM | - |
| OCK73_RS10155 () | 2088223..2089194 | + | 972 | WP_000448401.1 | Lipid A biosynthesis myristoyltransferase | VF |
| OCK73_RS10160 () | 2089267..2090709 | - | 1443 | WP_000091156.1 | pyruvate kinase | - |
| OCK73_RS10165 () | 2090833..2091702 | - | 870 | WP_001056720.1 | MurR/RpiR family transcriptional regulator | - |
| OCK73_RS10170 () | 2092044..2093519 | + | 1476 | WP_000301711.1 | glucose-6-phosphate dehydrogenase | - |
| OCK73_RS10175 () | 2093754..2095565 | + | 1812 | WP_001069113.1 | phosphogluconate dehydratase | - |
| OCK73_RS10180 () | 2095603..2096244 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| OCK73_RS10185 () | 2096344..2097522 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| OCK73_RS10190 () | 2097653..2097943 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| OCK73_RS10195 () | 2098011..2098364 | + | 354 | WP_001042119.1 | protein YebF | - |
| OCK73_RS10200 () | 2098458..2099117 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| OCK73_RS10205 () | 2099330..2101381 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| OCK73_RS10210 () | 2101416..2102114 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| OCK73_RS10215 () | 2102138..2102794 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| OCK73_RS10220 () | 2102902..2103132 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| OCK73_RS10225 () | 2103270..2103644 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| OCK73_RS10230 () | 2103645..2104520 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| OCK73_RS10235 () | 2104537..2104890 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2104990..2105135 | - | 146 | - | - | Antitoxin Detail |
| - | 2105030..2105133 | + | 104 | - | - | Toxin Detail |
| OCK73_RS10240 () | 2105264..2106187 | - | 924 | Protein_2002 | hypothetical protein ; Integrase | Integrase |
| OCK73_RS10245 () | 2106451..2106912 | - | 462 | Protein_2003 | DNA breaking-rejoining protein | - |
| OCK73_RS10250 () | 2106901..2107092 | + | 192 | Protein_2004 | glycoside hydrolase family 19 protein | - |
| OCK73_RS10255 () | 2107146..2107679 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| OCK73_RS10260 () | 2107936..2108103 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| OCK73_RS10265 () | 2108168..2108356 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| OCK73_RS10270 () | 2108411..2108671 | + | 261 | Protein_2008 | DUF1441 family protein | - |
| OCK73_RS10275 () | 2108886..2109230 | + | 345 | Protein_2009 | macro domain-containing protein | - |
| OCK73_RS10280 () | 2109240..2109710 | + | 471 | Protein_2010 | tail fiber assembly protein | - |
| OCK73_RS10285 () | 2109807..2110007 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| OCK73_RS10290 () | 2110397..2110577 | - | 181 | Protein_2012 | IS3 family transposase | - |
| OCK73_RS10295 () | 2110568..2110669 | + | 102 | Protein_2013 | arsenic transporter | - |
| OCK73_RS10300 () | 2111291..2111523 | + | 233 | Protein_2014 | helix-turn-helix domain-containing protein | - |
| OCK73_RS10305 () | 2111850..2112464 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| OCK73_RS10310 () | 2112474..2112632 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| OCK73_RS10315 () | 2112765..2113679 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| OCK73_RS10320 () | 2114992..2115414 | - | 423 | Protein_2018 | hypothetical protein ; Integrase | Integrase |
| OCK73_RS10325 () | 2115484..2116678 | + | 1195 | Protein_2019 | IS256 family transposase IS285 | Transposase |
| OCK73_RS10330 () | 2116824..2116964 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| OCK73_RS10335 () | 2117130..2117399 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| OCK73_RS10340 () | 2117769..2118188 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| OCK73_RS10345 () | 2118576..2119052 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| OCK73_RS10350 () | 2119382..2119777 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| OCK73_RS10355 () | 2120460..2121182 | + | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| OCK73_RS10360 () | 2121467..2121631 | + | 165 | WP_001134856.1 | membrane protein | - |
| OCK73_RS10365 () | 2121855..2122505 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| OCK73_RS10370 () | 2122524..2122715 | - | 192 | WP_000457836.1 | YebW family protein | - |
| OCK73_RS10375 () | 2122826..2123062 | - | 237 | WP_024131108.1 | YebV family protein | - |
| OCK73_RS10380 () | 2123180..2124619 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OCK73_RS10385 () | 2124697..2127330 | - | 2634 | WP_001535256.1 | Intermembrane transport protein YebT | VF |
| OCK73_RS10390 () | 2127299..2128582 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| OCK73_RS10395 () | 2128711..2129208 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| OCK73_RS10400 () | 2129306..2129992 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| OCK73_RS10405 () | 2130012..2132060 | + | 2049 | WP_033567178.1 | carboxy terminal-processing peptidase | - |
| OCK73_RS10410 () | 2132254..2133135 | + | 882 | WP_000984498.1 | protease HtpX | - |
| OCK73_RS10415 () | 2133183..2134556 | - | 1374 | WP_264917102.1 | MFS transporter | - |
| OCK73_RS10420 () | 2134732..2135523 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| OCK73_RS10425 () | 2135735..2135974 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| OCK73_RS10430 () | 2136132..2136275 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| OCK73_RS10435 () | 2136346..2136633 | + | 288 | WP_001000660.1 | YebO family protein | - |
| OCK73_RS10440 () | 2137282..2137425 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| OCK73_RS10445 () | 2137438..2137647 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| OCK73_RS10450 () | 2137867..2139612 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| OCK73_RS10455 () | 2139678..2140487 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| OCK73_RS10460 () | 2140484..2141050 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| OCK73_RS10465 () | 2141460..2141918 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0.009 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0.009 |