Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2051720..2051865 Replicon chromosome
Accession NZ_CP092510
Organism Salmonella enterica subsp. enterica serovar Thompson

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2051760..2051863 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2051720..2051865 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MKE90_RS10035 2048146..2048844 - 699 WP_000944282.1 exodeoxyribonuclease X -
MKE90_RS10040 2048868..2049524 - 657 WP_000100249.1 carbon-nitrogen hydrolase family protein -
MKE90_RS10045 2049632..2049862 - 231 WP_000856224.1 DNA polymerase III subunit theta -
MKE90_RS10050 2050000..2050374 + 375 WP_022544651.1 CopC domain-containing protein YobA -
MKE90_RS10055 2050375..2051250 + 876 WP_017466156.1 copper homeostasis membrane protein CopD -
MKE90_RS10060 2051267..2051620 + 354 WP_017466155.1 YebY family protein -
- 2051720..2051865 - 146 - - Antitoxin
- 2051760..2051863 + 104 - - Toxin
MKE90_RS10065 2052003..2053082 - 1080 WP_017466154.1 phage integrase Arm DNA-binding domain-containing protein -
MKE90_RS10070 2053115..2054266 - 1152 Protein_1967 PD-(D/E)XK nuclease-like domain-containing protein -
MKE90_RS10075 2054255..2054446 + 192 Protein_1968 glycoside hydrolase family 19 protein -
MKE90_RS10080 2054500..2055033 + 534 WP_001050883.1 DUF2514 domain-containing protein -
MKE90_RS10085 2055290..2055457 - 168 WP_000789530.1 lytic enzyme -
MKE90_RS10090 2055765..2056025 + 261 Protein_1971 DUF1441 family protein -
MKE90_RS10095 2056027..2056242 + 216 Protein_1972 shikimate transporter -
MKE90_RS10100 2056240..2056584 + 345 Protein_1973 macro domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Prophage - sopE2 2046058..2084756 38698


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T236335 NZ_CP092510:2051760-2051863 [Salmonella enterica subsp. enterica serovar Thompson]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 146 bp

>AT236335 NZ_CP092510:c2051865-2051720 [Salmonella enterica subsp. enterica serovar Thompson]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References