MGE detailed information
MGE type: Prophage MGE length: 52647 bp
Accession: NZ_CP098438 Location: 2065516..2118162 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain ATOMSal-L6 Replicon: chromosome
Accession: NZ_CP098438 Location: 2065516..2118162 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain ATOMSal-L6 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9193_RS09900 () | 2061709..2062605 | - | 897 | WP_010989032.1 | DUF4034 domain-containing protein | - |
| M9193_RS09905 () | 2063025..2063636 | + | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| M9193_RS09910 () | 2063645..2064655 | + | 1011 | WP_000568508.1 | Holliday junction branch migration DNA helicase RuvB | - |
| M9193_RS09915 () | 2064734..2065519 | - | 786 | WP_000571508.1 | zinc ABC transporter permease subunit ZnuB | - |
| M9193_RS09920 () | 2065516..2066271 | - | 756 | WP_000203014.1 | Zinc import ATP-binding protein ZnuC | VF |
| M9193_RS09925 () | 2066350..2067294 | + | 945 | WP_251103514.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| M9193_RS09930 () | 2067310..2068629 | + | 1320 | WP_001184028.1 | murein DD-endopeptidase MepM | - |
| M9193_RS09935 () | 2068746..2069717 | + | 972 | WP_000448401.1 | Lipid A biosynthesis myristoyltransferase | VF |
| M9193_RS09940 () | 2069790..2071232 | - | 1443 | WP_000091156.1 | pyruvate kinase | - |
| M9193_RS09945 () | 2071356..2072225 | - | 870 | WP_001056720.1 | MurR/RpiR family transcriptional regulator | - |
| M9193_RS09950 () | 2072567..2074042 | + | 1476 | WP_000301711.1 | glucose-6-phosphate dehydrogenase | - |
| M9193_RS09955 () | 2074277..2076088 | + | 1812 | WP_001069113.1 | phosphogluconate dehydratase | - |
| M9193_RS09960 () | 2076126..2076767 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| M9193_RS09965 () | 2076867..2078045 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| M9193_RS09970 () | 2078176..2078466 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| M9193_RS09975 () | 2078534..2078887 | + | 354 | WP_001042119.1 | protein YebF | - |
| M9193_RS09980 () | 2078981..2079640 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| M9193_RS09985 () | 2079853..2081904 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| M9193_RS09990 () | 2081939..2082637 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| M9193_RS09995 () | 2082661..2083317 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| M9193_RS10000 () | 2083425..2083655 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| M9193_RS10005 () | 2083793..2084167 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| M9193_RS10010 () | 2084168..2085043 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| M9193_RS10015 () | 2085060..2085413 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2085513..2085658 | - | 146 | - | - | Antitoxin Detail |
| - | 2085553..2085656 | + | 104 | - | - | Toxin Detail |
| M9193_RS10020 () | 2085787..2086710 | - | 924 | Protein_1959 | hypothetical protein ; Integrase | Integrase |
| M9193_RS10025 () | 2086974..2087435 | - | 462 | Protein_1960 | DNA breaking-rejoining protein | - |
| M9193_RS10030 () | 2087424..2087615 | + | 192 | Protein_1961 | glycoside hydrolase family 19 protein | - |
| M9193_RS10035 () | 2087669..2088202 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| M9193_RS10040 () | 2088459..2088626 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| M9193_RS10045 () | 2088691..2088879 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| M9193_RS10050 () | 2088934..2089194 | + | 261 | Protein_1965 | DUF1441 family protein | - |
| M9193_RS10055 () | 2089409..2089753 | + | 345 | Protein_1966 | macro domain-containing protein | - |
| M9193_RS10060 () | 2089763..2090233 | + | 471 | Protein_1967 | tail fiber assembly protein | - |
| M9193_RS10065 () | 2090330..2090530 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| M9193_RS10070 () | 2090920..2091100 | - | 181 | Protein_1969 | IS3 family transposase | - |
| M9193_RS10075 () | 2091100..2091225 | + | 126 | WP_000457876.1 | hypothetical protein | - |
| M9193_RS23740 () | 2091739..2091885 | - | 147 | WP_001520350.1 | hypothetical protein | - |
| M9193_RS10080 () | 2091879..2092046 | + | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| M9193_RS10085 () | 2092373..2092987 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| M9193_RS10090 () | 2092997..2093155 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| M9193_RS10095 () | 2093288..2094202 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| M9193_RS10100 () | 2095506..2095928 | - | 423 | Protein_1976 | hypothetical protein ; Integrase | Integrase |
| M9193_RS10105 () | 2095998..2097192 | + | 1195 | Protein_1977 | IS256 family transposase IS285 | Transposase |
| M9193_RS10110 () | 2097338..2097478 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| M9193_RS10115 () | 2097644..2097913 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| M9193_RS10120 () | 2098283..2098702 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| M9193_RS10125 () | 2099090..2099566 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| M9193_RS10130 () | 2099896..2100291 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| M9193_RS10135 () | 2100975..2101697 | + | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| M9193_RS10140 () | 2101982..2102146 | + | 165 | WP_001134856.1 | membrane protein | - |
| M9193_RS10145 () | 2102370..2103020 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| M9193_RS10150 () | 2103039..2103230 | - | 192 | WP_000457836.1 | YebW family protein | - |
| M9193_RS10155 () | 2103341..2103577 | - | 237 | WP_024131108.1 | YebV family protein | - |
| M9193_RS10160 () | 2103695..2105134 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| M9193_RS10165 () | 2105212..2107845 | - | 2634 | WP_001535256.1 | Intermembrane transport protein YebT | VF |
| M9193_RS10170 () | 2107814..2109097 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| M9193_RS10175 () | 2109226..2109723 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| M9193_RS10180 () | 2109821..2110507 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| M9193_RS10185 () | 2110527..2112575 | + | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| M9193_RS10190 () | 2112769..2113650 | + | 882 | WP_000984498.1 | protease HtpX | - |
| M9193_RS10195 () | 2113698..2115071 | - | 1374 | WP_000416127.1 | MFS transporter | - |
| M9193_RS10200 () | 2115247..2116038 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| M9193_RS10205 () | 2116250..2116489 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| M9193_RS10210 () | 2116647..2116790 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| M9193_RS10215 () | 2116861..2117148 | + | 288 | WP_001000660.1 | YebO family protein | - |
| M9193_RS10220 () | 2117797..2117940 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| M9193_RS10225 () | 2117953..2118162 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| M9193_RS10230 () | 2118382..2120127 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| M9193_RS10235 () | 2120193..2121002 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| M9193_RS10240 () | 2120999..2121565 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| M9193_RS10245 () | 2121963..2122433 | - | 471 | WP_000156281.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0.008 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0.009 |