MGE detailed information
MGE type: Prophage MGE length: 55302 bp
Accession: NZ_CP047540 Location: 2096291..2151592 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10359 Replicon: chromosome
Accession: NZ_CP047540 Location: 2096291..2151592 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10359 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DXN31_RS10225 () | 2091347..2091799 | + | 453 | WP_000653693.1 | dihydroneopterin triphosphate diphosphatase | - |
| DXN31_RS10230 () | 2091829..2092569 | + | 741 | WP_000907242.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| DXN31_RS10235 () | 2092606..2093127 | + | 522 | WP_000022509.1 | crossover junction endodeoxyribonuclease RuvC | - |
| DXN31_RS10240 () | 2093129..2093728 | - | 600 | WP_000716748.1 | YebB family permuted papain-like enzyme | - |
| DXN31_RS10245 () | 2094355..2095251 | - | 897 | WP_010989032.1 | DUF4034 domain-containing protein | - |
| DXN31_RS10250 () | 2095671..2096282 | + | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| DXN31_RS10255 () | 2096291..2097301 | + | 1011 | WP_000568508.1 | hypothetical protein | VF |
| DXN31_RS10260 () | 2097380..2098165 | - | 786 | WP_000571508.1 | hypothetical protein | VF |
| DXN31_RS10265 () | 2098162..2098917 | - | 756 | WP_000203014.1 | hypothetical protein | VF |
| DXN31_RS10270 () | 2098996..2099940 | + | 945 | WP_000939597.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| DXN31_RS10275 () | 2099956..2101275 | + | 1320 | WP_001184028.1 | murein DD-endopeptidase MepM | - |
| DXN31_RS10280 () | 2101392..2102363 | + | 972 | WP_000448401.1 | hypothetical protein | VF |
| DXN31_RS10285 () | 2102436..2103878 | - | 1443 | WP_000091156.1 | pyruvate kinase | - |
| DXN31_RS10290 () | 2104002..2104871 | - | 870 | WP_001056720.1 | MurR/RpiR family transcriptional regulator | - |
| DXN31_RS10295 () | 2105213..2106688 | + | 1476 | WP_000301711.1 | glucose-6-phosphate dehydrogenase | - |
| DXN31_RS10300 () | 2106923..2108734 | + | 1812 | WP_001069113.1 | phosphogluconate dehydratase | - |
| DXN31_RS10305 () | 2108772..2109413 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| DXN31_RS10310 () | 2109513..2110691 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| DXN31_RS10315 () | 2110822..2111112 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| DXN31_RS10320 () | 2111180..2111533 | + | 354 | WP_001042119.1 | protein YebF | - |
| DXN31_RS10325 () | 2111627..2112286 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| DXN31_RS10330 () | 2112499..2114550 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| DXN31_RS10335 () | 2114585..2115283 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| DXN31_RS10340 () | 2115307..2115963 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| DXN31_RS10345 () | 2116071..2116301 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| DXN31_RS10350 () | 2116439..2116813 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| DXN31_RS10355 () | 2116814..2117689 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| DXN31_RS10360 () | 2117706..2118059 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2118159..2118304 | - | 146 | - | - | Antitoxin Detail |
| - | 2118199..2118302 | + | 104 | - | - | Toxin Detail |
| DXN31_RS10365 () | 2118433..2119356 | - | 924 | Protein_2032 | hypothetical protein ; Integrase | Integrase |
| DXN31_RS10370 () | 2119620..2120081 | - | 462 | Protein_2033 | DNA breaking-rejoining protein | - |
| DXN31_RS10375 () | 2120070..2120261 | + | 192 | Protein_2034 | glycoside hydrolase family 19 protein | - |
| DXN31_RS10380 () | 2120315..2120848 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| DXN31_RS10385 () | 2121105..2121272 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| DXN31_RS10390 () | 2121337..2121525 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| DXN31_RS10395 () | 2121580..2121840 | + | 261 | Protein_2038 | DUF1441 family protein | - |
| DXN31_RS10400 () | 2122055..2122399 | + | 345 | Protein_2039 | macro domain-containing protein | - |
| DXN31_RS10405 () | 2122409..2122879 | + | 471 | Protein_2040 | tail fiber assembly protein | - |
| DXN31_RS10410 () | 2122976..2123176 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| DXN31_RS10415 () | 2123566..2123746 | - | 181 | Protein_2042 | IS3 family transposase | - |
| DXN31_RS10420 () | 2123746..2123871 | + | 126 | WP_000457876.1 | hypothetical protein | - |
| DXN31_RS25595 () | 2124385..2124531 | - | 147 | WP_001520350.1 | hypothetical protein | - |
| DXN31_RS10425 () | 2124525..2124692 | + | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| DXN31_RS10430 () | 2125019..2125633 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| DXN31_RS10435 () | 2125643..2125801 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| DXN31_RS10440 () | 2125934..2126848 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| DXN31_RS10445 () | 2128161..2128583 | - | 423 | Protein_2049 | hypothetical protein ; Integrase | Integrase |
| DXN31_RS10450 () | 2128653..2129847 | + | 1195 | Protein_2050 | IS256 family transposase IS285 | Transposase |
| DXN31_RS10455 () | 2129993..2130133 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| DXN31_RS10460 () | 2130299..2130568 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| DXN31_RS10465 () | 2130938..2131357 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| DXN31_RS10470 () | 2131745..2132221 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| DXN31_RS10475 () | 2132551..2132946 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| DXN31_RS10480 () | 2133629..2134351 | + | 723 | WP_000182072.1 | hypothetical protein | VF |
| DXN31_RS10485 () | 2134636..2134800 | + | 165 | WP_001134856.1 | membrane protein | - |
| DXN31_RS10490 () | 2135024..2135674 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| DXN31_RS10495 () | 2135693..2135884 | - | 192 | WP_000457836.1 | YebW family protein | - |
| DXN31_RS10500 () | 2135995..2136231 | - | 237 | WP_024131108.1 | YebV family protein | - |
| DXN31_RS10505 () | 2136349..2137788 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DXN31_RS10510 () | 2137866..2140499 | - | 2634 | WP_001535256.1 | hypothetical protein | VF |
| DXN31_RS10515 () | 2140468..2141751 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| DXN31_RS10520 () | 2141880..2142377 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| DXN31_RS10525 () | 2142475..2143161 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| DXN31_RS10530 () | 2143181..2145229 | + | 2049 | WP_033567178.1 | carboxy terminal-processing peptidase | - |
| DXN31_RS10535 () | 2145423..2146304 | + | 882 | WP_000984498.1 | protease HtpX | - |
| DXN31_RS10540 () | 2146352..2147725 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| DXN31_RS10545 () | 2147901..2148692 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| DXN31_RS10550 () | 2148904..2149143 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| DXN31_RS10555 () | 2149301..2149444 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| DXN31_RS10560 () | 2149515..2149802 | + | 288 | WP_001000660.1 | YebO family protein | - |
| DXN31_RS10565 () | 2150451..2150609 | + | 159 | WP_131166398.1 | DUF2627 domain-containing protein | - |
| DXN31_RS10570 () | 2150643..2151340 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| DXN31_RS10575 () | 2151383..2151592 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| DXN31_RS10580 () | 2151812..2153557 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| DXN31_RS10585 () | 2153623..2154432 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| DXN31_RS10590 () | 2154429..2154995 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| DXN31_RS10595 () | 2155405..2155863 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0.01 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0.01 |