MGE detailed information
MGE type: Prophage MGE length: 38312 bp
Accession: NZ_CP085983 Location: 2250893..2289204 Organism: Salmonella enterica strain SZL 31 Replicon: chromosome
Accession: NZ_CP085983 Location: 2250893..2289204 Organism: Salmonella enterica strain SZL 31 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJY15_RS10920 () | 2247165..2247806 | + | 642 | WP_000800494.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| LJY15_RS10925 () | 2247906..2249084 | - | 1179 | WP_000173429.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| LJY15_RS10930 () | 2249215..2249505 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| LJY15_RS10935 () | 2249573..2249926 | + | 354 | WP_001042123.1 | protein YebF | - |
| LJY15_RS10940 () | 2250020..2250679 | + | 660 | WP_023993328.1 | tellurite resistance TerB family protein | - |
| LJY15_RS10945 () | 2250893..2252944 | + | 2052 | WP_000936990.1 | oligopeptidase B | - |
| LJY15_RS10950 () | 2252979..2253677 | - | 699 | WP_000944278.1 | exodeoxyribonuclease X | - |
| LJY15_RS10955 () | 2253701..2254357 | - | 657 | WP_000100256.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| LJY15_RS10960 () | 2254465..2254695 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| LJY15_RS10965 () | 2254833..2255207 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| LJY15_RS10970 () | 2255208..2256083 | + | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| LJY15_RS10975 () | 2256100..2256453 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2256555..2256698 | - | 144 | - | - | Antitoxin Detail |
| - | 2256593..2256696 | + | 104 | - | - | Toxin Detail |
| LJY15_RS10980 () | 2256856..2257749 | - | 894 | Protein_2132 | hypothetical protein ; Integrase | Integrase |
| LJY15_RS10985 () | 2258013..2258474 | - | 462 | Protein_2133 | DNA breaking-rejoining protein | - |
| LJY15_RS10990 () | 2258463..2258654 | + | 192 | Protein_2134 | glycoside hydrolase family 19 protein | - |
| LJY15_RS10995 () | 2258708..2259241 | + | 534 | WP_001050883.1 | DUF2514 domain-containing protein | - |
| LJY15_RS11000 () | 2259498..2259665 | - | 168 | WP_000789529.1 | lytic enzyme | - |
| LJY15_RS11005 () | 2259973..2260233 | + | 261 | Protein_2137 | DUF1441 family protein | - |
| LJY15_RS24460 () | 2260235..2260450 | + | 216 | Protein_2138 | shikimate transporter | - |
| LJY15_RS24465 () | 2260460..2260747 | + | 288 | Protein_2139 | macro domain-containing protein | - |
| LJY15_RS11015 () | 2260760..2261271 | + | 512 | Protein_2140 | tail fiber assembly protein | - |
| LJY15_RS11020 () | 2261368..2261568 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| LJY15_RS11025 () | 2261958..2262138 | - | 181 | Protein_2142 | IS3 family transposase | - |
| LJY15_RS11030 () | 2262129..2262230 | + | 102 | Protein_2143 | arsenic transporter | - |
| LJY15_RS11035 () | 2262852..2263084 | + | 233 | Protein_2144 | helix-turn-helix domain-containing protein | - |
| LJY15_RS11040 () | 2263411..2264025 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| LJY15_RS11045 () | 2264035..2264193 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| LJY15_RS11050 () | 2264326..2265240 | - | 915 | WP_001233445.1 | DMT family transporter | - |
| LJY15_RS11055 () | 2266530..2266953 | - | 424 | Protein_2148 | tyrosine-type recombinase/integrase | - |
| LJY15_RS11060 () | 2267023..2268231 | + | 1209 | WP_023993323.1 | IS256 family transposase ISEc39 | Transposase |
| LJY15_RS11065 () | 2268377..2268517 | - | 141 | WP_001576018.1 | hypothetical protein | - |
| LJY15_RS11070 () | 2268683..2268952 | - | 270 | WP_012664556.1 | hypothetical protein | - |
| LJY15_RS11075 () | 2269325..2269744 | + | 420 | WP_000354407.1 | GNAT family N-acetyltransferase | - |
| LJY15_RS11080 () | 2270131..2270607 | - | 477 | WP_023218584.1 | hypothetical protein | - |
| LJY15_RS11085 () | 2270937..2271332 | - | 396 | WP_000422890.1 | DUF1398 domain-containing protein | - |
| LJY15_RS11090 () | 2272016..2272738 | + | 723 | WP_000182074.1 | Guanine nucleotide exchange factor sopE2 | VF |
| LJY15_RS11095 () | 2273023..2273187 | + | 165 | WP_001134857.1 | hypothetical protein | - |
| LJY15_RS11100 () | 2273412..2274062 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| LJY15_RS11105 () | 2274081..2274272 | - | 192 | WP_000457838.1 | DUF1482 family protein | - |
| LJY15_RS11110 () | 2274383..2274619 | - | 237 | WP_024131167.1 | YebV family protein | - |
| LJY15_RS11115 () | 2274737..2276176 | - | 1440 | WP_023993322.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LJY15_RS11120 () | 2276254..2278887 | - | 2634 | WP_001529852.1 | hypothetical protein | VF |
| LJY15_RS11125 () | 2278856..2280139 | - | 1284 | WP_001207293.1 | membrane integrity lipid transport subunit YebS | - |
| LJY15_RS11130 () | 2280268..2280765 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| LJY15_RS11135 () | 2280863..2281549 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| LJY15_RS11140 () | 2281569..2283617 | + | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| LJY15_RS11145 () | 2283811..2284692 | + | 882 | WP_000984498.1 | protease HtpX | - |
| LJY15_RS11150 () | 2284740..2286113 | - | 1374 | WP_000416139.1 | MFS transporter | - |
| LJY15_RS11155 () | 2286289..2287080 | + | 792 | WP_001262197.1 | DNA-binding transcriptional regulator KdgR | - |
| LJY15_RS11160 () | 2287292..2287531 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| LJY15_RS11165 () | 2287689..2287832 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| LJY15_RS11170 () | 2287903..2288190 | + | 288 | WP_001000660.1 | YebO family protein | - |
| LJY15_RS11175 () | 2288839..2288982 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| LJY15_RS11180 () | 2288995..2289204 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| LJY15_RS11185 () | 2289424..2291169 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| LJY15_RS11190 () | 2291235..2292044 | + | 810 | WP_023993321.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| LJY15_RS11195 () | 2292041..2292607 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| LJY15_RS11200 () | 2293017..2293475 | - | 459 | WP_000156274.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0.009 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0.009 |