MGE detailed information
MGE type: Prophage MGE length: 54518 bp
Accession: NZ_CP117398 Location: 2112186..2166703 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain RM015 Replicon: chromosome
Accession: NZ_CP117398 Location: 2112186..2166703 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain RM015 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ09_RS10325 () | 2107242..2107694 | + | 453 | WP_000653693.1 | dihydroneopterin triphosphate diphosphatase | - |
| PQQ09_RS10330 () | 2107724..2108464 | + | 741 | WP_000907242.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| PQQ09_RS10335 () | 2108501..2109022 | + | 522 | WP_000022509.1 | crossover junction endodeoxyribonuclease RuvC | - |
| PQQ09_RS10340 () | 2109024..2109623 | - | 600 | WP_000716748.1 | YebB family permuted papain-like enzyme | - |
| PQQ09_RS10345 () | 2110250..2111146 | - | 897 | WP_010989032.1 | DUF4034 domain-containing protein | - |
| PQQ09_RS10350 () | 2111566..2112177 | + | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| PQQ09_RS10355 () | 2112186..2113196 | + | 1011 | WP_000568508.1 | hypothetical protein | VF |
| PQQ09_RS10360 () | 2113275..2114060 | - | 786 | WP_000571508.1 | hypothetical protein | VF |
| PQQ09_RS10365 () | 2114057..2114812 | - | 756 | WP_000203014.1 | hypothetical protein | VF |
| PQQ09_RS10370 () | 2114891..2115835 | + | 945 | WP_000939597.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| PQQ09_RS10375 () | 2115851..2117170 | + | 1320 | WP_001184028.1 | murein DD-endopeptidase MepM | - |
| PQQ09_RS10380 () | 2117287..2118258 | + | 972 | WP_000448401.1 | hypothetical protein | VF |
| PQQ09_RS10385 () | 2118331..2119773 | - | 1443 | WP_000091156.1 | pyruvate kinase | - |
| PQQ09_RS10390 () | 2119897..2120766 | - | 870 | WP_001056720.1 | MurR/RpiR family transcriptional regulator | - |
| PQQ09_RS10395 () | 2121108..2122583 | + | 1476 | WP_000301711.1 | glucose-6-phosphate dehydrogenase | - |
| PQQ09_RS10400 () | 2122818..2124629 | + | 1812 | WP_001069113.1 | phosphogluconate dehydratase | - |
| PQQ09_RS10405 () | 2124667..2125308 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| PQQ09_RS10410 () | 2125408..2126586 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PQQ09_RS10415 () | 2126717..2127007 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| PQQ09_RS10420 () | 2127075..2127428 | + | 354 | WP_001042119.1 | protein YebF | - |
| PQQ09_RS10425 () | 2127522..2128181 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| PQQ09_RS10430 () | 2128394..2130445 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| PQQ09_RS10435 () | 2130480..2131178 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| PQQ09_RS10440 () | 2131202..2131858 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| PQQ09_RS10445 () | 2131966..2132196 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PQQ09_RS10450 () | 2132334..2132708 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| PQQ09_RS10455 () | 2132709..2133584 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| PQQ09_RS10460 () | 2133601..2133954 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2134054..2134199 | - | 146 | - | - | Antitoxin Detail |
| - | 2134094..2134197 | + | 104 | - | - | Toxin Detail |
| PQQ09_RS10465 () | 2134328..2135251 | - | 924 | Protein_2047 | hypothetical protein ; Integrase | Integrase |
| PQQ09_RS10470 () | 2135515..2135976 | - | 462 | Protein_2048 | DNA breaking-rejoining protein | - |
| PQQ09_RS10475 () | 2135965..2136156 | + | 192 | Protein_2049 | glycoside hydrolase family 19 protein | - |
| PQQ09_RS10480 () | 2136210..2136743 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| PQQ09_RS10485 () | 2137000..2137167 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| PQQ09_RS10490 () | 2137232..2137420 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| PQQ09_RS10495 () | 2137475..2137735 | + | 261 | Protein_2053 | DUF1441 family protein | - |
| PQQ09_RS10500 () | 2137950..2138294 | + | 345 | Protein_2054 | macro domain-containing protein | - |
| PQQ09_RS10505 () | 2138304..2138774 | + | 471 | Protein_2055 | tail fiber assembly protein | - |
| PQQ09_RS10510 () | 2138871..2139071 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| PQQ09_RS10515 () | 2139461..2139641 | - | 181 | Protein_2057 | IS3 family transposase | - |
| PQQ09_RS10520 () | 2139641..2139766 | + | 126 | WP_000457876.1 | hypothetical protein | - |
| PQQ09_RS10525 () | 2140420..2140587 | + | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| PQQ09_RS10530 () | 2140914..2141528 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| PQQ09_RS10535 () | 2141538..2141696 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| PQQ09_RS10540 () | 2141829..2142743 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| PQQ09_RS10545 () | 2144047..2144469 | - | 423 | Protein_2063 | hypothetical protein ; Integrase | Integrase |
| PQQ09_RS10550 () | 2144539..2145733 | + | 1195 | Protein_2064 | IS256 family transposase IS285 | Transposase |
| PQQ09_RS10555 () | 2145879..2146019 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| PQQ09_RS10560 () | 2146185..2146454 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| PQQ09_RS10565 () | 2146824..2147243 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| PQQ09_RS10570 () | 2147631..2148107 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| PQQ09_RS10575 () | 2148437..2148832 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| PQQ09_RS10580 () | 2149516..2150238 | + | 723 | WP_000182072.1 | hypothetical protein | VF |
| PQQ09_RS10585 () | 2150523..2150687 | + | 165 | WP_001134856.1 | membrane protein | - |
| PQQ09_RS10590 () | 2150911..2151561 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| PQQ09_RS10595 () | 2151580..2151771 | - | 192 | WP_000457836.1 | YebW family protein | - |
| PQQ09_RS10600 () | 2151882..2152118 | - | 237 | WP_024131108.1 | YebV family protein | - |
| PQQ09_RS10605 () | 2152236..2153675 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PQQ09_RS10610 () | 2153753..2156386 | - | 2634 | WP_001535256.1 | hypothetical protein | VF |
| PQQ09_RS10615 () | 2156355..2157638 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| PQQ09_RS10620 () | 2157767..2158264 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| PQQ09_RS10625 () | 2158362..2159048 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| PQQ09_RS10630 () | 2159068..2161116 | + | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| PQQ09_RS10635 () | 2161310..2162191 | + | 882 | WP_000984498.1 | protease HtpX | - |
| PQQ09_RS10640 () | 2162239..2163612 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| PQQ09_RS10645 () | 2163788..2164579 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| PQQ09_RS10650 () | 2164791..2165030 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| PQQ09_RS10655 () | 2165188..2165331 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| PQQ09_RS10660 () | 2165402..2165689 | + | 288 | WP_001000660.1 | YebO family protein | - |
| PQQ09_RS10665 () | 2166338..2166481 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| PQQ09_RS10670 () | 2166494..2166703 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| PQQ09_RS10675 () | 2166923..2168668 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| PQQ09_RS10680 () | 2168734..2169543 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| PQQ09_RS10685 () | 2169540..2170106 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| PQQ09_RS10690 () | 2170516..2170974 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0.009 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0.009 |