MGE detailed information
MGE type: Prophage MGE length: 54525 bp
Accession: NZ_AP023306 Location: 2065259..2119783 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4567 Replicon: chromosome
Accession: NZ_AP023306 Location: 2065259..2119783 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4567 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5646_RS10045 () | 2060315..2060767 | + | 453 | WP_000653693.1 | dihydroneopterin triphosphate diphosphatase | - |
| K5646_RS10050 () | 2060797..2061537 | + | 741 | WP_000907242.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| K5646_RS10055 () | 2061574..2062095 | + | 522 | WP_000022509.1 | crossover junction endodeoxyribonuclease RuvC | - |
| K5646_RS10060 () | 2062097..2062696 | - | 600 | WP_000716748.1 | YebB family permuted papain-like enzyme | - |
| K5646_RS10065 () | 2063323..2064219 | - | 897 | WP_010989032.1 | DUF4034 domain-containing protein | - |
| K5646_RS10070 () | 2064639..2065250 | + | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| K5646_RS10075 () | 2065259..2066269 | + | 1011 | WP_000568508.1 | Holliday junction ATP-dependent DNA helicase RuvB | VF |
| K5646_RS10080 () | 2066348..2067133 | - | 786 | WP_000571508.1 | hypothetical protein | VF |
| K5646_RS10085 () | 2067130..2067885 | - | 756 | WP_000203014.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| K5646_RS10090 () | 2067964..2068908 | + | 945 | WP_000939597.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| K5646_RS10095 () | 2068924..2070243 | + | 1320 | WP_001184028.1 | murein DD-endopeptidase MepM | - |
| K5646_RS10100 () | 2070360..2071331 | + | 972 | WP_000448401.1 | Lipid A biosynthesis myristoyltransferase | VF |
| K5646_RS10105 () | 2071404..2072846 | - | 1443 | WP_000091156.1 | pyruvate kinase | - |
| K5646_RS10110 () | 2072970..2073839 | - | 870 | WP_001056720.1 | MurR/RpiR family transcriptional regulator | - |
| K5646_RS10115 () | 2074181..2075656 | + | 1476 | WP_000301711.1 | glucose-6-phosphate dehydrogenase | - |
| K5646_RS10120 () | 2075891..2077702 | + | 1812 | WP_001069113.1 | phosphogluconate dehydratase | - |
| K5646_RS10125 () | 2077740..2078381 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| K5646_RS10130 () | 2078481..2079659 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| K5646_RS10135 () | 2079790..2080080 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| K5646_RS10140 () | 2080148..2080501 | + | 354 | WP_001042119.1 | protein YebF | - |
| K5646_RS10145 () | 2080595..2081254 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| K5646_RS10150 () | 2081467..2083518 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| K5646_RS10155 () | 2083553..2084251 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| K5646_RS10160 () | 2084275..2084931 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| K5646_RS10165 () | 2085039..2085269 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| K5646_RS10170 () | 2085407..2085781 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| K5646_RS10175 () | 2085782..2086657 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| K5646_RS10180 () | 2086674..2087027 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2087127..2087272 | - | 146 | - | - | Antitoxin Detail |
| - | 2087167..2087270 | + | 104 | - | - | Toxin Detail |
| K5646_RS10185 () | 2087401..2088324 | - | 924 | Protein_2001 | hypothetical protein ; Integrase | Integrase |
| K5646_RS24765 () | 2088588..2089049 | - | 462 | Protein_2002 | DNA breaking-rejoining protein | - |
| K5646_RS10195 () | 2089038..2089229 | + | 192 | Protein_2003 | glycoside hydrolase family 19 protein | - |
| K5646_RS10200 () | 2089283..2089816 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| K5646_RS10205 () | 2090073..2090240 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| K5646_RS10210 () | 2090305..2090493 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| K5646_RS10215 () | 2090548..2090808 | + | 261 | Protein_2007 | DUF1441 family protein | - |
| K5646_RS10220 () | 2091023..2091367 | + | 345 | Protein_2008 | macro domain-containing protein | - |
| K5646_RS10225 () | 2091377..2091847 | + | 471 | Protein_2009 | tail fiber assembly protein | - |
| K5646_RS10230 () | 2091944..2092144 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| K5646_RS24770 () | 2092534..2092714 | - | 181 | Protein_2011 | IS3 family transposase | - |
| K5646_RS10235 () | 2092705..2092806 | + | 102 | Protein_2012 | arsenic transporter | - |
| K5646_RS24775 () | 2093428..2093660 | + | 233 | Protein_2013 | helix-turn-helix domain-containing protein | - |
| K5646_RS10250 () | 2093987..2094601 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| K5646_RS10255 () | 2094611..2094769 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| K5646_RS10260 () | 2094902..2095816 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| K5646_RS10265 () | 2097129..2097551 | - | 423 | Protein_2017 | hypothetical protein ; Integrase | Integrase |
| K5646_RS10270 () | 2097621..2098815 | + | 1195 | Protein_2018 | IS256 family transposase IS285 | Transposase |
| K5646_RS10275 () | 2098961..2099101 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| K5646_RS10280 () | 2099267..2099536 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| K5646_RS10285 () | 2099906..2100325 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| K5646_RS10290 () | 2100713..2101189 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| K5646_RS10295 () | 2101519..2101914 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| K5646_RS10300 () | 2102597..2103319 | + | 723 | WP_000182072.1 | hypothetical protein | VF |
| K5646_RS10305 () | 2103604..2103768 | + | 165 | WP_001134856.1 | membrane protein | - |
| K5646_RS10310 () | 2103992..2104642 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| K5646_RS10315 () | 2104661..2104852 | - | 192 | WP_000457836.1 | YebW family protein | - |
| K5646_RS10320 () | 2104963..2105199 | - | 237 | WP_024131108.1 | YebV family protein | - |
| K5646_RS10325 () | 2105317..2106756 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| K5646_RS10330 () | 2106834..2109467 | - | 2634 | WP_001535256.1 | hypothetical protein | VF |
| K5646_RS10335 () | 2109436..2110719 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| K5646_RS10340 () | 2110848..2111345 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| K5646_RS10345 () | 2111443..2112129 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| K5646_RS10350 () | 2112149..2114197 | + | 2049 | WP_033567178.1 | carboxy terminal-processing peptidase | - |
| K5646_RS10355 () | 2114390..2115271 | + | 882 | WP_000984498.1 | protease HtpX | - |
| K5646_RS10360 () | 2115319..2116692 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| K5646_RS10365 () | 2116868..2117659 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| K5646_RS10370 () | 2117871..2118110 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| K5646_RS10375 () | 2118268..2118411 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| K5646_RS10380 () | 2118482..2118769 | + | 288 | WP_001000660.1 | YebO family protein | - |
| K5646_RS10385 () | 2119418..2119561 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| K5646_RS10390 () | 2119574..2119783 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| K5646_RS10395 () | 2120003..2121748 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| K5646_RS10400 () | 2121814..2122623 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| K5646_RS10405 () | 2122620..2123186 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| K5646_RS10410 () | 2123596..2124054 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0.009 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0.009 |