MGE detailed information
MGE type: Prophage MGE length: 54526 bp
Accession: NZ_AP023303 Location: 2122962..2177487 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4526 Replicon: chromosome
Accession: NZ_AP023303 Location: 2122962..2177487 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4526 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5618_RS10395 () | 2118018..2118470 | + | 453 | WP_000653693.1 | dihydroneopterin triphosphate diphosphatase | - |
| K5618_RS10400 () | 2118500..2119240 | + | 741 | WP_000907242.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| K5618_RS10405 () | 2119277..2119798 | + | 522 | WP_000022509.1 | crossover junction endodeoxyribonuclease RuvC | - |
| K5618_RS10410 () | 2119800..2120399 | - | 600 | WP_000716748.1 | YebB family permuted papain-like enzyme | - |
| K5618_RS10415 () | 2121026..2121922 | - | 897 | WP_010989032.1 | DUF4034 domain-containing protein | - |
| K5618_RS10420 () | 2122342..2122953 | + | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| K5618_RS10425 () | 2122962..2123972 | + | 1011 | WP_000568508.1 | Holliday junction ATP-dependent DNA helicase RuvB | VF |
| K5618_RS10430 () | 2124051..2124836 | - | 786 | WP_000571508.1 | hypothetical protein | VF |
| K5618_RS10435 () | 2124833..2125588 | - | 756 | WP_000203014.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| K5618_RS10440 () | 2125667..2126611 | + | 945 | WP_000939597.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| K5618_RS10445 () | 2126627..2127946 | + | 1320 | WP_001184028.1 | murein DD-endopeptidase MepM | - |
| K5618_RS10450 () | 2128063..2129034 | + | 972 | WP_000448401.1 | Lipid A biosynthesis myristoyltransferase | VF |
| K5618_RS10455 () | 2129107..2130549 | - | 1443 | WP_000091156.1 | pyruvate kinase | - |
| K5618_RS10460 () | 2130673..2131542 | - | 870 | WP_001056720.1 | MurR/RpiR family transcriptional regulator | - |
| K5618_RS10465 () | 2131884..2133359 | + | 1476 | WP_000301711.1 | glucose-6-phosphate dehydrogenase | - |
| K5618_RS10470 () | 2133594..2135405 | + | 1812 | WP_001069113.1 | phosphogluconate dehydratase | - |
| K5618_RS10475 () | 2135443..2136084 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| K5618_RS10480 () | 2136184..2137362 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| K5618_RS10485 () | 2137493..2137783 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| K5618_RS10490 () | 2137851..2138204 | + | 354 | WP_001042119.1 | protein YebF | - |
| K5618_RS10495 () | 2138298..2138957 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| K5618_RS10500 () | 2139170..2141221 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| K5618_RS10505 () | 2141256..2141954 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| K5618_RS10510 () | 2141978..2142634 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| K5618_RS10515 () | 2142742..2142972 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| K5618_RS10520 () | 2143110..2143484 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| K5618_RS10525 () | 2143485..2144360 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| K5618_RS10530 () | 2144377..2144730 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2144830..2144975 | - | 146 | - | - | Antitoxin Detail |
| - | 2144870..2144973 | + | 104 | - | - | Toxin Detail |
| K5618_RS10535 () | 2145104..2146027 | - | 924 | Protein_2077 | hypothetical protein ; Integrase | Integrase |
| K5618_RS24650 () | 2146291..2146752 | - | 462 | Protein_2078 | DNA breaking-rejoining protein | - |
| K5618_RS10545 () | 2146741..2146932 | + | 192 | Protein_2079 | glycoside hydrolase family 19 protein | - |
| K5618_RS10550 () | 2146986..2147519 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| K5618_RS10555 () | 2147776..2147943 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| K5618_RS10560 () | 2148008..2148196 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| K5618_RS10565 () | 2148251..2148511 | + | 261 | Protein_2083 | DUF1441 family protein | - |
| K5618_RS10570 () | 2148726..2149070 | + | 345 | Protein_2084 | macro domain-containing protein | - |
| K5618_RS10575 () | 2149080..2149550 | + | 471 | Protein_2085 | tail fiber assembly protein | - |
| K5618_RS10580 () | 2149647..2149847 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| K5618_RS24655 () | 2150237..2150417 | - | 181 | Protein_2087 | IS3 family transposase | - |
| K5618_RS10585 () | 2150408..2150509 | + | 102 | Protein_2088 | arsenic transporter | - |
| K5618_RS24660 () | 2151131..2151363 | + | 233 | Protein_2089 | helix-turn-helix domain-containing protein | - |
| K5618_RS10600 () | 2151690..2152304 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| K5618_RS10605 () | 2152314..2152472 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| K5618_RS10610 () | 2152605..2153519 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| K5618_RS10615 () | 2154832..2155254 | - | 423 | Protein_2093 | hypothetical protein ; Integrase | Integrase |
| K5618_RS10620 () | 2155324..2156518 | + | 1195 | Protein_2094 | IS256 family transposase IS285 | Transposase |
| K5618_RS10625 () | 2156664..2156804 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| K5618_RS10630 () | 2156970..2157239 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| K5618_RS10635 () | 2157609..2158028 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| K5618_RS10640 () | 2158416..2158892 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| K5618_RS10645 () | 2159222..2159617 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| K5618_RS10650 () | 2160300..2161022 | + | 723 | WP_000182072.1 | hypothetical protein | VF |
| K5618_RS10655 () | 2161307..2161471 | + | 165 | WP_001134856.1 | membrane protein | - |
| K5618_RS10660 () | 2161695..2162345 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| K5618_RS10665 () | 2162364..2162555 | - | 192 | WP_000457836.1 | YebW family protein | - |
| K5618_RS10670 () | 2162666..2162902 | - | 237 | WP_024131108.1 | YebV family protein | - |
| K5618_RS10675 () | 2163020..2164459 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| K5618_RS10680 () | 2164537..2167170 | - | 2634 | WP_001535256.1 | hypothetical protein | VF |
| K5618_RS10685 () | 2167139..2168422 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| K5618_RS10690 () | 2168551..2169048 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| K5618_RS10695 () | 2169146..2169832 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| K5618_RS10700 () | 2169852..2171900 | + | 2049 | WP_033567178.1 | carboxy terminal-processing peptidase | - |
| K5618_RS10705 () | 2172094..2172975 | + | 882 | WP_000984498.1 | protease HtpX | - |
| K5618_RS10710 () | 2173023..2174396 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| K5618_RS10715 () | 2174572..2175363 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| K5618_RS10720 () | 2175575..2175814 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| K5618_RS10725 () | 2175972..2176115 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| K5618_RS10730 () | 2176186..2176473 | + | 288 | WP_001000660.1 | YebO family protein | - |
| K5618_RS10735 () | 2177122..2177265 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| K5618_RS10740 () | 2177278..2177487 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| K5618_RS10745 () | 2177707..2179452 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| K5618_RS10750 () | 2179518..2180327 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| K5618_RS10755 () | 2180324..2180890 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| K5618_RS10760 () | 2181300..2181758 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0.009 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0.009 |