MGE detailed information
MGE type: Prophage MGE length: 54526 bp
Accession: NZ_CP047529 Location: 2832708..2887233 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10640 Replicon: chromosome
Accession: NZ_CP047529 Location: 2832708..2887233 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10640 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DXN10_RS13805 () | 2828437..2828895 | + | 459 | WP_000156280.1 | DUF986 family protein | - |
| DXN10_RS13810 () | 2829305..2829871 | + | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| DXN10_RS13815 () | 2829868..2830677 | - | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| DXN10_RS13820 () | 2830743..2832488 | - | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| DXN10_RS13825 () | 2832708..2832917 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| DXN10_RS13830 () | 2832930..2833073 | - | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| DXN10_RS13835 () | 2833722..2834009 | - | 288 | WP_001000660.1 | YebO family protein | - |
| DXN10_RS13840 () | 2834080..2834223 | - | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| DXN10_RS13845 () | 2834381..2834620 | + | 240 | WP_001236777.1 | invasion protein YobH | - |
| DXN10_RS13850 () | 2834832..2835623 | - | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| DXN10_RS13855 () | 2835799..2837172 | + | 1374 | WP_000416128.1 | MFS transporter | - |
| DXN10_RS13860 () | 2837220..2838101 | - | 882 | WP_000984498.1 | protease HtpX | - |
| DXN10_RS13865 () | 2838295..2840343 | - | 2049 | WP_033567178.1 | carboxy terminal-processing peptidase | - |
| DXN10_RS13870 () | 2840363..2841049 | - | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| DXN10_RS13875 () | 2841147..2841644 | - | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| DXN10_RS13880 () | 2841773..2843056 | + | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| DXN10_RS13885 () | 2843025..2845658 | + | 2634 | WP_001535256.1 | hypothetical protein | VF |
| DXN10_RS13890 () | 2845736..2847175 | + | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DXN10_RS13895 () | 2847293..2847529 | + | 237 | WP_024131108.1 | YebV family protein | - |
| DXN10_RS13900 () | 2847640..2847831 | + | 192 | WP_000457836.1 | YebW family protein | - |
| DXN10_RS13905 () | 2847850..2848500 | - | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| DXN10_RS13910 () | 2848724..2848888 | - | 165 | WP_001134856.1 | membrane protein | - |
| DXN10_RS13915 () | 2849173..2849895 | - | 723 | WP_000182072.1 | hypothetical protein | VF |
| DXN10_RS13920 () | 2850578..2850973 | + | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| DXN10_RS13925 () | 2851303..2851779 | + | 477 | WP_000030934.1 | hypothetical protein | - |
| DXN10_RS13930 () | 2852167..2852586 | - | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| DXN10_RS13935 () | 2852956..2853225 | + | 270 | WP_001752421.1 | hypothetical protein | - |
| DXN10_RS13940 () | 2853391..2853531 | + | 141 | WP_001617922.1 | hypothetical protein | - |
| DXN10_RS13945 () | 2853677..2854871 | - | 1195 | Protein_2708 | IS256 family transposase IS285 | Transposase |
| DXN10_RS13950 () | 2854941..2855363 | + | 423 | Protein_2709 | hypothetical protein ; Integrase | Integrase |
| DXN10_RS13955 () | 2856676..2857590 | + | 915 | WP_001233446.1 | DMT family transporter | - |
| DXN10_RS13960 () | 2857723..2857881 | + | 159 | WP_000480735.1 | DUF5993 family protein | - |
| DXN10_RS13965 () | 2857891..2858505 | + | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| DXN10_RS13970 () | 2858832..2858999 | - | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| DXN10_RS25355 () | 2858993..2859139 | + | 147 | WP_001520350.1 | hypothetical protein | - |
| DXN10_RS13975 () | 2859653..2859778 | - | 126 | WP_000457876.1 | hypothetical protein | - |
| DXN10_RS13980 () | 2859778..2859958 | + | 181 | Protein_2716 | IS3 family transposase | - |
| DXN10_RS13985 () | 2860348..2860548 | + | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| DXN10_RS13990 () | 2860645..2861115 | - | 471 | Protein_2718 | tail fiber assembly protein | - |
| DXN10_RS13995 () | 2861125..2861469 | - | 345 | Protein_2719 | macro domain-containing protein | - |
| DXN10_RS14000 () | 2861684..2861944 | - | 261 | Protein_2720 | DUF1441 family protein | - |
| DXN10_RS14005 () | 2861999..2862187 | + | 189 | WP_001521334.1 | hypothetical protein | - |
| DXN10_RS14010 () | 2862252..2862419 | + | 168 | WP_000789530.1 | lytic enzyme | - |
| DXN10_RS14015 () | 2862676..2863209 | - | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| DXN10_RS14020 () | 2863263..2863454 | - | 192 | Protein_2724 | glycoside hydrolase family 19 protein | - |
| DXN10_RS14025 () | 2863443..2863904 | + | 462 | Protein_2725 | DNA breaking-rejoining protein | - |
| DXN10_RS14030 () | 2864168..2865091 | + | 924 | Protein_2726 | hypothetical protein ; Integrase | Integrase |
| - | 2865220..2865365 | + | 146 | - | - | Antitoxin Detail |
| - | 2865222..2865325 | - | 104 | - | - | Toxin Detail |
| DXN10_RS14035 () | 2865465..2865818 | - | 354 | WP_000722368.1 | YebY family protein | - |
| DXN10_RS14040 () | 2865835..2866710 | - | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| DXN10_RS14045 () | 2866711..2867085 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| DXN10_RS14050 () | 2867223..2867453 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| DXN10_RS14055 () | 2867561..2868217 | + | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| DXN10_RS14060 () | 2868241..2868939 | + | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| DXN10_RS14065 () | 2868974..2871025 | - | 2052 | WP_000936999.1 | oligopeptidase B | - |
| DXN10_RS14070 () | 2871238..2871897 | - | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| DXN10_RS14075 () | 2871991..2872344 | - | 354 | WP_001042119.1 | protein YebF | - |
| DXN10_RS14080 () | 2872412..2872702 | - | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| DXN10_RS14085 () | 2872833..2874011 | + | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| DXN10_RS14090 () | 2874111..2874752 | - | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| DXN10_RS14095 () | 2874790..2876601 | - | 1812 | WP_001069113.1 | phosphogluconate dehydratase | - |
| DXN10_RS14100 () | 2876836..2878311 | - | 1476 | WP_000301711.1 | glucose-6-phosphate dehydrogenase | - |
| DXN10_RS14105 () | 2878653..2879522 | + | 870 | WP_001056720.1 | MurR/RpiR family transcriptional regulator | - |
| DXN10_RS14110 () | 2879646..2881088 | + | 1443 | WP_000091156.1 | pyruvate kinase | - |
| DXN10_RS14115 () | 2881161..2882132 | - | 972 | WP_000448401.1 | Lipid A biosynthesis myristoyltransferase | VF |
| DXN10_RS14120 () | 2882249..2883568 | - | 1320 | WP_001184028.1 | murein DD-endopeptidase MepM | - |
| DXN10_RS14125 () | 2883584..2884528 | - | 945 | WP_000939597.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| DXN10_RS14130 () | 2884607..2885362 | + | 756 | WP_000203014.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| DXN10_RS14135 () | 2885359..2886144 | + | 786 | WP_000571508.1 | hypothetical protein | VF |
| DXN10_RS14140 () | 2886223..2887233 | - | 1011 | WP_000568508.1 | Holliday junction ATP-dependent DNA helicase RuvB | VF |
| DXN10_RS14145 () | 2887242..2887853 | - | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| DXN10_RS14150 () | 2888273..2889169 | + | 897 | WP_010989032.1 | DUF4034 domain-containing protein | - |
| DXN10_RS14155 () | 2889796..2890395 | + | 600 | WP_000716748.1 | YebB family permuted papain-like enzyme | - |
| DXN10_RS14160 () | 2890397..2890918 | - | 522 | WP_000022509.1 | crossover junction endodeoxyribonuclease RuvC | - |
| DXN10_RS14165 () | 2890955..2891695 | - | 741 | WP_000907242.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| DXN10_RS14170 () | 2891725..2892177 | - | 453 | WP_000653693.1 | dihydroneopterin triphosphate diphosphatase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0.009 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0.009 |